RetrogeneDB ID: | retro_pabe_2713 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 5:348244..348715(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MTIF3 | ||
Ensembl ID: | ENSPPYG00000005236 | ||
Aliases: | None | ||
Description: | mitochondrial translational initiation factor 3 [Source:HGNC Symbol;Acc:29788] |
Percent Identity: | 78.98 % |
Parental protein coverage: | 56.32 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | STEPAEYQLMTGLQIFQEQQRLREMEKASPKTGPTVRKELILSSNIGQHDLDTKTKQIQQWIKKKHLVQI |
S.EPAE.QLMTG.Q...E..RLRE.EK..PK.GPT..KE..LSSN.GQHDLD.KTKQIQ.WIKKKH.V.I | |
Retrocopy | SKEPAEDQLMTGMQTHREWLRLRETEKGNPKPGPTLTKEPTLSSNFGQHDLDAKTKQIQPWIKKKHQVRI |
Parental | TIKKGKNVDVSENEMEEIFHQILQTMPGIATFSSKPQAVRG-KALMCVLRALSKNEEKAYRETQETQERD |
TIKKG.N.D.SEN..EEIFHQILQT.PGIATFSS.PQAV.G.KALM.VLR.LSK.EEKAYRETQETQERD | |
Retrocopy | TIKKGENIDESENKVEEIFHQILQTVPGIATFSSRPQAVQGRKALMWVLRPLSKKEEKAYRETQETQERD |
Parental | TLNKDHGNDKESNVLHQ |
TLNKDHGNDKESNVLHQ | |
Retrocopy | TLNKDHGNDKESNVLHQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 8 .57 RPM |
SRP007412_cerebellum | 0 .00 RPM | 11 .92 RPM |
SRP007412_heart | 0 .00 RPM | 14 .99 RPM |
SRP007412_kidney | 0 .00 RPM | 8 .52 RPM |
SRP007412_liver | 0 .00 RPM | 8 .05 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3284 |
Pan troglodytes | retro_ptro_2221 |
Gorilla gorilla | retro_ggor_1318 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004404 | 1 retrocopy | |
Homo sapiens | ENSG00000122033 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000008409 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000000343 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000011721 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000005236 | 1 retrocopy |
retro_pabe_2713 ,
|
Pan troglodytes | ENSPTRG00000005732 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000012276 | 3 retrocopies |