RetrogeneDB ID:

retro_nleu_1350

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397290.1:323258..323729(-)
Located in intron of:ENSNLEG00000010815
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:MTIF3
Ensembl ID:ENSNLEG00000000343
Aliases:None
Description:mitochondrial translational initiation factor 3 [Source:HGNC Symbol;Acc:29788]


Retrocopy-Parental alignment summary:






>retro_nleu_1350
TCAAAGGAGCCTGCAGAAGACCAGCTCATGACAGGAAGGCAGACCCGCCAGGAACGGCTGAGGCTGAGAGAGATGGAGAA
GGGTAACCCCAAAACTGGACCAACCCTGACAAAGGAACTGACTTTTTCTTCAAACGTTGGACAACAGGATTTGAAGGCAA
AGACTAAACAGATTCAGCCGTGGATTAAGAAAAAACACCAAGTTCGAATTACTATAAAGAAAGGAGAAAATGTAGACGAG
TCGGAAAATAAAGTGGAGGAGATATTCCATCAAATACTCCAGACTGTGCCTGGAATAGCTACATTCTCATCCAGGCCACA
AGCTGTTCAAGGAGGAAAAGCTTTAATGTGGGTTCTTTGTCCTTTGAGCAAAAAGGAAGAGAAGGCATATCGAGAAACTC
AAGAGACCCAGGAAAGAGACACTTTGAACGAAGACCATGGAAATGATAATGAATCAAATGTTCCGCATCAG

ORF - retro_nleu_1350 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 82.17 %
Parental protein coverage: 61.09 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalSIEPAEYQLMTGLQILQERQRLREMEKASPKTGPTLRKELTLSSNIGQHDLDTKTKQIQQWIKKKHLVRI
S.EPAE.QLMTG.Q..QER.RLREMEK..PKTGPTL.KELT.SSN.GQ.DL..KTKQIQ.WIKKKH.VRI
RetrocopySKEPAEDQLMTGRQTRQERLRLREMEKGNPKTGPTLTKELTFSSNVGQQDLKAKTKQIQPWIKKKHQVRI
ParentalTIKKGKNVDMSENEMEEIFHQILQTMPGIATFSSRPQAVQGGKALMCVLRALSKNEEKAYRETQETQERD
TIKKG.NVD.SEN..EEIFHQILQT.PGIATFSSRPQAVQGGKALM.VL..LSK.EEKAYRETQETQERD
RetrocopyTIKKGENVDESENKVEEIFHQILQTVPGIATFSSRPQAVQGGKALMWVLCPLSKKEEKAYRETQETQERD
ParentalTLNKDHGNDKESNVLHQ
TLN.DHGND.ESNV.HQ
RetrocopyTLNEDHGNDNESNVPHQ

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_1350 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 8 parental genes, and 10 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG000000044041 retrocopy
Homo sapiens ENSG000001220331 retrocopy
Gorilla gorilla ENSGGOG000000084091 retrocopy
Nomascus leucogenys ENSNLEG00000000343 1 retrocopy
retro_nleu_1350 ,
Oryctolagus cuniculus ENSOCUG000000117211 retrocopy
Pongo abelii ENSPPYG000000052361 retrocopy
Pan troglodytes ENSPTRG000000057321 retrocopy
Tupaia belangeri ENSTBEG000000122763 retrocopies



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