RetrogeneDB ID: | retro_hsap_3682 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 6:153603424..153603868(-) | ||
Located in intron of: | ENSG00000213121 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000218426 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL27A | ||
Ensembl ID: | ENSG00000166441 | ||
Aliases: | RPL27A, L27A | ||
Description: | ribosomal protein L27a [Source:HGNC Symbol;Acc:10329] |
Percent Identity: | 97.3 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MPSRLRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFC |
MPSRLRKTRKLRGHVSH.HGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFC | |
Retrocopy | MPSRLRKTRKLRGHVSHRHGRIGKHRKHPGGRGNAGGLHHHRINFDKYHPGYFGKVGMKHYHLKRNQSFC |
Parental | PTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQPVIVKAKFFSRRAEEKIKSV |
PTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQ.V.V.AKFFSRRAEEKIKSV | |
Retrocopy | PTVNLDKLWTLVSEQTRVNAAKNKTGAAPIIDVVRSGYYKVLGKGKLPKQAVTVQAKFFSRRAEEKIKSV |
Parental | GGACVLVA |
GGACVLVA | |
Retrocopy | GGACVLVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .91 RPM | 407 .04 RPM |
bodymap2_adrenal | 1 .47 RPM | 683 .19 RPM |
bodymap2_brain | 0 .23 RPM | 103 .14 RPM |
bodymap2_breast | 0 .62 RPM | 309 .93 RPM |
bodymap2_colon | 0 .75 RPM | 485 .08 RPM |
bodymap2_heart | 0 .30 RPM | 123 .73 RPM |
bodymap2_kidney | 0 .41 RPM | 179 .49 RPM |
bodymap2_liver | 0 .68 RPM | 187 .33 RPM |
bodymap2_lung | 1 .69 RPM | 563 .40 RPM |
bodymap2_lymph_node | 0 .99 RPM | 575 .42 RPM |
bodymap2_ovary | 1 .48 RPM | 534 .80 RPM |
bodymap2_prostate | 2 .17 RPM | 586 .75 RPM |
bodymap2_skeletal_muscle | 1 .49 RPM | 291 .64 RPM |
bodymap2_testis | 0 .34 RPM | 232 .16 RPM |
bodymap2_thyroid | 0 .85 RPM | 324 .56 RPM |
bodymap2_white_blood_cells | 1 .14 RPM | 719 .98 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_160884 | 242 libraries | 434 libraries | 915 libraries | 187 libraries | 51 libraries |
TSS #2 | TSS_160885 | 259 libraries | 502 libraries | 930 libraries | 117 libraries | 21 libraries |
TSS #3 | TSS_160886 | 1 library | 0 libraries | 0 libraries | 0 libraries | 1828 libraries |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_33 |
Gorilla gorilla | retro_ggor_155 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000166441 | 7 retrocopies |
retro_hsap_1263, retro_hsap_1908, retro_hsap_2352, retro_hsap_239, retro_hsap_3335, retro_hsap_3586, retro_hsap_3682 ,
|
Gorilla gorilla | ENSGGOG00000001660 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000016616 | 7 retrocopies | |
Macaca mulatta | ENSMMUG00000021828 | 2 retrocopies | |
Mus musculus | ENSMUSG00000046364 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000003333 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000014214 | 10 retrocopies | |
Tarsius syrichta | ENSTSYG00000013207 | 16 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 4 .17 RPM |
CEU_NA11843 | 5 .06 RPM |
CEU_NA11930 | 4 .76 RPM |
CEU_NA12004 | 2 .81 RPM |
CEU_NA12400 | 5 .37 RPM |
CEU_NA12751 | 2 .53 RPM |
CEU_NA12760 | 8 .71 RPM |
CEU_NA12827 | 4 .62 RPM |
CEU_NA12872 | 2 .67 RPM |
CEU_NA12873 | 3 .45 RPM |
FIN_HG00183 | 4 .15 RPM |
FIN_HG00277 | 3 .22 RPM |
FIN_HG00315 | 3 .39 RPM |
FIN_HG00321 | 2 .57 RPM |
FIN_HG00328 | 2 .18 RPM |
FIN_HG00338 | 2 .60 RPM |
FIN_HG00349 | 7 .54 RPM |
FIN_HG00375 | 3 .79 RPM |
FIN_HG00377 | 3 .63 RPM |
FIN_HG00378 | 2 .49 RPM |
GBR_HG00099 | 3 .55 RPM |
GBR_HG00111 | 2 .69 RPM |
GBR_HG00114 | 2 .81 RPM |
GBR_HG00119 | 1 .94 RPM |
GBR_HG00131 | 2 .18 RPM |
GBR_HG00133 | 2 .92 RPM |
GBR_HG00134 | 2 .38 RPM |
GBR_HG00137 | 3 .82 RPM |
GBR_HG00142 | 4 .36 RPM |
GBR_HG00143 | 3 .45 RPM |
TSI_NA20512 | 3 .22 RPM |
TSI_NA20513 | 2 .68 RPM |
TSI_NA20518 | 5 .47 RPM |
TSI_NA20532 | 2 .55 RPM |
TSI_NA20538 | 2 .76 RPM |
TSI_NA20756 | 5 .64 RPM |
TSI_NA20765 | 1 .95 RPM |
TSI_NA20771 | 6 .92 RPM |
TSI_NA20786 | 2 .77 RPM |
TSI_NA20798 | 2 .03 RPM |
YRI_NA18870 | 6 .90 RPM |
YRI_NA18907 | 2 .74 RPM |
YRI_NA18916 | 2 .65 RPM |
YRI_NA19093 | 2 .50 RPM |
YRI_NA19099 | 3 .22 RPM |
YRI_NA19114 | 2 .28 RPM |
YRI_NA19118 | 3 .85 RPM |
YRI_NA19213 | 1 .96 RPM |
YRI_NA19214 | 2 .09 RPM |
YRI_NA19223 | 1 .97 RPM |