RetrogeneDB ID: | retro_hsap_3684 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 6:157787019..157787625(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000213078 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HSD17B12 | ||
Ensembl ID: | ENSG00000149084 | ||
Aliases: | HSD17B12, KAR, SDR12C1 | ||
Description: | hydroxysteroid (17-beta) dehydrogenase 12 [Source:HGNC Symbol;Acc:18646] |
Percent Identity: | 83.98 % |
Parental protein coverage: | 65.06 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | ASEDIYDKIKTGLAGLEIGILVNNVGMSYEYPEYFLDVPDLDNVIKKMININILSVCKMTQLV-LPGMVE |
ASEDIYDKIKTGLAGLEIG.LVNNVGMSYEYP.YFLD.PDLDN.IKKMININILSVCKMTQLV..PG..E | |
Retrocopy | ASEDIYDKIKTGLAGLEIGVLVNNVGMSYEYPKYFLDIPDLDNMIKKMININILSVCKMTQLV<APGLME |
Parental | RSKGAILNISSGSGMLPVPLLTIYSATKTFVDFFSQCLHEEYRSKGVFVQSVLPYFVATKLAKIRKPTLD |
RSKG..LN.S.G.GM.PVPLLTI.SATKTFVDFFSQCLH.EYRSKG.FVQSVLPYFVA.KLAKIRKPTLD | |
Retrocopy | RSKGVNLNLSAGRGMFPVPLLTICSATKTFVDFFSQCLHGEYRSKGIFVQSVLPYFVAIKLAKIRKPTLD |
Parental | KPSPETF-VKSAIKTVGLQSRTNGYLIHALMGSIISNLPSWIYLKIVMNM-NKSTRAHYLKKTKKN |
KPS..TF..KSAIKTVGLQS.TNGYLI.ALMG.IIS.LPSWIY.KI.M.M..KSTR..YLKKTKKN | |
Retrocopy | KPSSGTF<LKSAIKTVGLQSQTNGYLIYALMGLIISILPSWIYFKIIMAM<EKSTRDRYLKKTKKN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 79 .03 RPM |
bodymap2_adrenal | 0 .00 RPM | 81 .57 RPM |
bodymap2_brain | 0 .00 RPM | 142 .94 RPM |
bodymap2_breast | 0 .00 RPM | 125 .68 RPM |
bodymap2_colon | 0 .00 RPM | 108 .26 RPM |
bodymap2_heart | 0 .04 RPM | 67 .33 RPM |
bodymap2_kidney | 0 .12 RPM | 124 .37 RPM |
bodymap2_liver | 0 .00 RPM | 153 .23 RPM |
bodymap2_lung | 0 .00 RPM | 117 .56 RPM |
bodymap2_lymph_node | 0 .00 RPM | 74 .59 RPM |
bodymap2_ovary | 0 .00 RPM | 93 .45 RPM |
bodymap2_prostate | 0 .19 RPM | 90 .46 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 29 .68 RPM |
bodymap2_testis | 0 .00 RPM | 96 .40 RPM |
bodymap2_thyroid | 0 .06 RPM | 138 .28 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 55 .81 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000011325 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000004834 | 1 retrocopy | |
Homo sapiens | ENSG00000149084 | 1 retrocopy |
retro_hsap_3684 ,
|
Gorilla gorilla | ENSGGOG00000002003 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017959 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000016351 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000009102 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000003343 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000003522 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000005473 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000005103 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .02 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .03 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .05 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .03 RPM |
GBR_HG00142 | 0 .03 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .07 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .02 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .08 RPM |
YRI_NA19118 | 0 .02 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .05 RPM |
YRI_NA19223 | 0 .06 RPM |