RetrogeneDB ID: | retro_hsap_3826 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 7:23602082..23603879(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000224785 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ABCE1 | ||
Ensembl ID: | ENSG00000164163 | ||
Aliases: | ABCE1, ABC38, OABP, RLI, RNASEL1, RNASELI, RNS4I | ||
Description: | ATP-binding cassette, sub-family E (OABP), member 1 [Source:HGNC Symbol;Acc:69] |
Percent Identity: | 90.02 % |
Parental protein coverage: | 99.67 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | MADKLTRIAIVNHDKCKPKKCRQECKKSCPVVRMGKLCIEVTPQSKIAWISETLCIGCGICIKKCPFGAL |
.ADKL.RIAIVNHDKCKPKKC.QECKKSCPVV.MG.LCIEVTPQSKIAWISETLCIGCGICIKKCPFGAL | |
Retrocopy | LADKLMRIAIVNHDKCKPKKCQQECKKSCPVVQMGELCIEVTPQSKIAWISETLCIGCGICIKKCPFGAL |
Parental | SIVNLPSNLEKETTHRYCANAFKLHRLPIPRPGEVLGLVGTNGIGKSTALKI-LAGKQKPNLGKYDDPPD |
SI.NLPSNLEKETTH.YCAN.....RLPIPRPG.VLGLVGTNGIGKSTALKI.LAGKQKPNLGKYDDPPD | |
Retrocopy | SIDNLPSNLEKETTH*YCANVI*INRLPIPRPGKVLGLVGTNGIGKSTALKI>LAGKQKPNLGKYDDPPD |
Parental | WQEILTYFRGSELQNYFTKILEDDLKAIIKPQYVDQIPKAAKGTVGSILDRKDETKTQAIVCQQLDLTHL |
WQ.ILTYFR.SELQNYFTKILE..LKAIIK.QYVDQIPK.AKGTVGSILD.KDETKTQAIVCQQL.LTHL | |
Retrocopy | WQDILTYFRESELQNYFTKILEENLKAIIKSQYVDQIPKPAKGTVGSILD*KDETKTQAIVCQQLELTHL |
Parental | KERNVEDLSGGELQRFACAVVCIQKADIFMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVL |
.ERNVEDLSGGELQRFACAV.CIQKADIFMF.E.S.YLDVKQ.LK.AITI.SLINPDRYI.VVE.DL.VL | |
Retrocopy | TERNVEDLSGGELQRFACAVICIQKADIFMFGETSRYLDVKQHLKPAITIQSLINPDRYIVVVEYDLGVL |
Parental | DYLSDFICCLYGVPSAYGVVTMPFSVREGINIFLDGYVPTENLRFRDASLVFKVAETANEEEVKKMCMYK |
DYLSDFICCLYGVPS.YGVVT.PFSVR.GINIFLDGYVPTENLRF.DASLVFKVAETANEEEVK.MCMYK | |
Retrocopy | DYLSDFICCLYGVPSTYGVVTVPFSVRKGINIFLDGYVPTENLRFQDASLVFKVAETANEEEVKMMCMYK |
Parental | YPGM-KKKMGEFELAIVAGEFTDSEIMV-MLGENGTGKTTFIRMLAGRLKPDEGGEVPVLNVSYKPQKIS |
Y.GM...KMGEFELAIVAGEFTDSEIMV.MLGENG.GKTTFIRMLAGRL.PDE.GEVPVLNVSYK.QKIS | |
Retrocopy | YSGM<ELKMGEFELAIVAGEFTDSEIMVMMLGENGMGKTTFIRMLAGRLEPDEEGEVPVLNVSYKLQKIS |
Parental | PKSTGSVRQLLHEKIRDAYTHPQFVTDVMKPLQIENIIDQEVQTLSGGELQRVALALCLGKPADVYLIDE |
PKSTGSVRQLL.EKIRDAYTHPQFVT.VMKPLQIENIIDQEVQTLSGGELQRVALALCLGKPADVYLIDE | |
Retrocopy | PKSTGSVRQLLREKIRDAYTHPQFVTNVMKPLQIENIIDQEVQTLSGGELQRVALALCLGKPADVYLIDE |
Parental | PSAYLDSEQRLMAARVVKRFILHAKKTAFVVEHDFIMATYLADRVIVFDGVPS-KNTVANSPQTLLAGMN |
PSAYLDSEQRLMAARVVKRFILHAKKTAFVVEHDFIMATYLAD.VI.FDGVPS.KNTVANSPQTLLAGMN | |
Retrocopy | PSAYLDSEQRLMAARVVKRFILHAKKTAFVVEHDFIMATYLADHVIIFDGVPSTKNTVANSPQTLLAGMN |
Parental | KFLSQLEITFRRDPNNYRPRINKLNSIKDVEQKKSGNYFFL |
.F.SQLE.TFRRDPN.YRP.IN..N.IKDVEQKKSGNYFFL | |
Retrocopy | TF*SQLETTFRRDPNHYRPQIN*FNLIKDVEQKKSGNYFFL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 54 .55 RPM |
bodymap2_adrenal | 0 .00 RPM | 85 .07 RPM |
bodymap2_brain | 0 .00 RPM | 81 .43 RPM |
bodymap2_breast | 0 .00 RPM | 61 .40 RPM |
bodymap2_colon | 0 .00 RPM | 64 .52 RPM |
bodymap2_heart | 0 .00 RPM | 44 .69 RPM |
bodymap2_kidney | 0 .00 RPM | 65 .64 RPM |
bodymap2_liver | 0 .00 RPM | 53 .48 RPM |
bodymap2_lung | 0 .00 RPM | 66 .56 RPM |
bodymap2_lymph_node | 0 .00 RPM | 43 .91 RPM |
bodymap2_ovary | 0 .00 RPM | 96 .48 RPM |
bodymap2_prostate | 0 .00 RPM | 61 .21 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 63 .68 RPM |
bodymap2_testis | 0 .00 RPM | 106 .01 RPM |
bodymap2_thyroid | 0 .00 RPM | 87 .92 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 73 .47 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2603 |
Pongo abelii | retro_pabe_3067 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004534 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000007367 | 1 retrocopy | |
Homo sapiens | ENSG00000164163 | 1 retrocopy |
retro_hsap_3826 ,
|
Macaca mulatta | ENSMMUG00000004433 | 1 retrocopy | |
Mus musculus | ENSMUSG00000058355 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000005460 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000001821 | 2 retrocopies | |
Procavia capensis | ENSPCAG00000006183 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000015097 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016481 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .03 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .02 RPM |
CEU_NA12760 | 0 .04 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .07 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .02 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .02 RPM |
GBR_HG00134 | 0 .02 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .08 RPM |
GBR_HG00143 | 0 .03 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .03 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .03 RPM |
YRI_NA18870 | 0 .03 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .03 RPM |
YRI_NA19114 | 0 .03 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .02 RPM |
YRI_NA19223 | 0 .00 RPM |