RetrogeneDB ID: | retro_hsap_4877 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | X:94031740..94032398(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000231001 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCNB1IP1 | ||
Ensembl ID: | ENSG00000100814 | ||
Aliases: | CCNB1IP1, C14orf18, HEI10 | ||
Description: | cyclin B1 interacting protein 1, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:19437] |
Percent Identity: | 72.52 % |
Parental protein coverage: | 78.7 % |
Number of stop codons detected: | 8 |
Number of frameshifts detected | 4 |
Parental | LDIVRTELSPSEEYKAMVLAGLRPEIVLDISSRALAFWTYQVHQERLYQEYNFSKAEGHLKQMEKIYTQQ |
LDIV.TELSPSEEYKAMVLAGL.PE.VL.IS..AL.F.TY.V.QE.LYQEY.F.KAEGHLKQMEKIYTQQ | |
Retrocopy | LDIVLTELSPSEEYKAMVLAGLQPEMVLNISA*ALYF*TY*VYQESLYQEYTFNKAEGHLKQMEKIYTQQ |
Parental | IQSKDVELTSMKGEVTSMKKVLEEYKKK-FSDISEKLMERNRQYQ-KLQGLYDSLRLRNITIANHEGTLE |
IQSKDVELT..KGE.TSMK.VL.E..K..F.DI..K.ME.N..YQ.KLQ.L.DSLRL.NIT.AN.E.T.E | |
Retrocopy | IQSKDVELTFIKGEITSMK*VLKEHNKN>FTDIFKKCMEYNHKYQ>KLQSLCDSLRL*NITVANQEHTFE |
Parental | PSMIAQSGVLGFPLGNNSKFPLDNTPVRNRGDGDGDFQFRPFFAG-SPTAPEPSNS-FFSFVSPSRELEQ |
PS.IAQSGV.GF.LGNN.K..LD..PV.N.GDGDGDFQFR....G.S...PEPSNS.FFSF.SPS.ELEQ | |
Retrocopy | PSIIAQSGVFGFSLGNNAKCLLDSVPV*NLGDGDGDFQFRXXXXG>SHKTPEPSNS>FFSFASPSHELEQ |
Parental | QQVSSRAFKVKR |
QQVSSRA.K.K. | |
Retrocopy | QQVSSRA*K*KQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 22 .52 RPM |
bodymap2_adrenal | 0 .00 RPM | 30 .23 RPM |
bodymap2_brain | 0 .00 RPM | 26 .04 RPM |
bodymap2_breast | 0 .00 RPM | 19 .73 RPM |
bodymap2_colon | 0 .00 RPM | 27 .86 RPM |
bodymap2_heart | 0 .00 RPM | 36 .61 RPM |
bodymap2_kidney | 0 .00 RPM | 39 .62 RPM |
bodymap2_liver | 0 .00 RPM | 13 .24 RPM |
bodymap2_lung | 0 .00 RPM | 58 .09 RPM |
bodymap2_lymph_node | 0 .00 RPM | 28 .29 RPM |
bodymap2_ovary | 0 .00 RPM | 58 .18 RPM |
bodymap2_prostate | 0 .00 RPM | 63 .63 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 14 .22 RPM |
bodymap2_testis | 0 .00 RPM | 33 .77 RPM |
bodymap2_thyroid | 0 .00 RPM | 42 .03 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 19 .75 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_3249 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000009967 | 2 retrocopies | |
Homo sapiens | ENSG00000100814 | 1 retrocopy |
retro_hsap_4877 ,
|
Gorilla gorilla | ENSGGOG00000004586 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000000893 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000016251 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010636 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006088 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000026056 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000004394 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .03 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .02 RPM |