RetrogeneDB ID:

retro_mmur_1551

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:scaffold_81597:1300..1936(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:CCNB1IP1
Ensembl ID:ENSMICG00000000893
Aliases:None
Description:cyclin B1 interacting protein 1, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:19437]


Retrocopy-Parental alignment summary:






>retro_mmur_1551
ACACAGAACTGTCCATCAGAGGAATATGACGCTATGGTACTGGCAGGAATGCGCTCAGAGATCGTGTTGGACATTAGCTC
ACGAGCACTGGCCTTCTGGATGTATCCAGTACATGGGGAGTGTCTCTATCAAGAATATAATTTTAGCAAGGCTGTGGGCC
ATCTGAAACAGATGGAGAAGACACATATTCAGCAAAGACATTGCAAGGATGTAGAATTGACCTTTATGAAAAGGCAGTTC
ACCTCCATGAAGAAAATTCTAGAAGAATACAAGAAAAATTTCAGTGACATAATCTGAGAAATTCATGGAGCACAATCACC
AGTATCAACAGCTGCAAGGCCCCTATGATGGGCCTGGCTCCAAATCCTAACTATTGCTAACCAAGAAGGCACGCTCGAAC
CATCCATGATCACACAGTCTGGTGTTTTTGGTTTCTCATCTGGGAACAACTCAAAGTTTTCTTTGGATATAATACACCAG
TTCAAAATCGGAGATGGAGATTTTTCGGTTCAGACCATTTTTTGTGGGTTCTCCCACAGCACCTGAACCCAGCAACAGCT
TTTTTAGTTTTGCCTCTCCATGTCATGAATCACAGCAGGAGCAAGTCCCCAGCAGGCCTTCAAAGTAAAAAGAATT

ORF - retro_mmur_1551 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 73.39 %
Parental protein coverage: 71.57 %
Number of stop codons detected: 0
Number of frameshifts detected 4


Retrocopy - Parental Gene Alignment:

ParentalTELSPSEEYKAMVLAGLRPEIVLDISSRALAFWTYQVHQERLYQEYNFSKAEGHLKQMEKIYTQQIQSKD
T...PSEEY.AMVLAG.R.EIVLDISSRALAFW.Y.VH.E.LYQEYNFSKA.GHLKQMEK...QQ...KD
RetrocopyTQNCPSEEYDAMVLAGMRSEIVLDISSRALAFWMYPVHGECLYQEYNFSKAVGHLKQMEKTHIQQRHCKD
ParentalVELTSMKGEVTSMKKVLEEYKKKFSDI-SEKLMERNRQYQKLQGLYDS-LRLRNLTIANQEGTLEPSMIT
VELT.MK...TSMKK.LEEYKK.FSDI.SEK.ME.N.QYQ.LQG.YD....L..LTIANQEGTLEPSMIT
RetrocopyVELTFMKRQFTSMKKILEEYKKNFSDI>SEKFMEHNHQYQQLQGPYDG<AWLQILTIANQEGTLEPSMIT
ParentalQSGVFGFPVGNNSKFSLDNTPVRNRGGGDGDFQFRPFF-VGSPTAPEPSNSFFSFASPSRELQQEQVSSR
QSGVFGF..GNNSKFSLD.......G.G..DF.....F.VGSPTAPEPSNSFFSFASP..E.QQEQV.SR
RetrocopyQSGVFGFSSGNNSKFSLDIIHQFKIGDG--DFSVQTIF>VGSPTAPEPSNSFFSFASPCHESQQEQVPSR
Parental-AFKVKRI
.AFKVKRI
Retrocopy<AFKVKRI

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_1551 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_1551 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 9 parental genes, and 12 retrocopies.

Species Parental gene accession Retrocopies number
Callithrix jacchus ENSCJAG000000099672 retrocopies
Homo sapiens ENSG000001008141 retrocopy
Gorilla gorilla ENSGGOG000000045861 retrocopy
Microcebus murinus ENSMICG00000000893 2 retrocopies
retro_mmur_1264, retro_mmur_1551 ,
Macaca mulatta ENSMMUG000000162512 retrocopies
Nomascus leucogenys ENSNLEG000000106361 retrocopy
Pan troglodytes ENSPTRG000000060881 retrocopy
Rattus norvegicus ENSRNOG000000260561 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000043941 retrocopy



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