RetrogeneDB ID: | retro_rnor_842 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 11:84448817..84449377(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ccnb1ip1 | ||
Ensembl ID: | ENSRNOG00000026056 | ||
Aliases: | None | ||
Description: | E3 ubiquitin-protein ligase CCNB1IP1 [Source:RefSeq peptide;Acc:NP_001020312] |
Percent Identity: | 76.6 % |
Parental protein coverage: | 67.75 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | LDISSRALAFWTYQVHQERLYQEYNFSKAENHLKQMEKIYT-QQIQSKDVELTSMKGEVTSMKKVLEEYK |
LDISSRALAFWTYQVHQERLYQEYN.SKAENHLKQ.EK....QQ.QSK.VEL.S...E..SM.KVLE..K | |
Retrocopy | LDISSRALAFWTYQVHQERLYQEYNLSKAENHLKQIEKTDA<QQTQSKEVELASVNWEIISMMKVLEGNK |
Parental | KKFSDISEKLMERNRQYQKLQGLYDSLRLRNITIASQEGSLEPAMIPQSGVFGFPSGNSSKFSLDHTPAG |
..F..I.EK.ME.N.QYQ..QGLYDSL.LRN.T.AS.EGSLEP..IPQSGVFGFP.G..SKFSLD.TP.G | |
Retrocopy | RNFNGIYEKRMECNCQYQNIQGLYDSLTLRNFTMASREGSLEPGVIPQSGVFGFPPGKRSKFSLDRTPVG |
Parental | NQGGGDEDVQFRPFFVCSPTAPEPVNNFFSFASQSHEAEQQVCSRAFK |
NQGGGDE.VQF.PFFVCSPTAPEPVNNFFSFASQ.HE.EQ.VCSRA.K | |
Retrocopy | NQGGGDEGVQFGPFFVCSPTAPEPVNNFFSFASQRHETEQRVCSRALK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .14 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .49 RPM |
SRP017611_liver | 0 .00 RPM | 0 .07 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000009967 | 2 retrocopies | |
Homo sapiens | ENSG00000100814 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004586 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000000893 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000016251 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000010636 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006088 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000026056 | 1 retrocopy |
retro_rnor_842 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000004394 | 1 retrocopy |