RetrogeneDB ID: | retro_mmul_2617 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | X:93524693..93525229(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CCNB1IP1 | ||
Ensembl ID: | ENSMMUG00000016251 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 70. % |
Parental protein coverage: | 64.26 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | LDIVRTELSPSEEYKAMVLAGLRPEIVLDISSRALAFWTYQVHQERLYQEYNFSKAEGHLKQMEKIYTQQ |
LDIV.TELSPSEEYKAMVLAGL.PE.VL.ISS.A..FWTY.V.QE.LYQEYNFSKAEGHLKQMEKIY.QQ | |
Retrocopy | LDIVLTELSPSEEYKAMVLAGLQPEMVLNISS*A*YFWTYYVYQESLYQEYNFSKAEGHLKQMEKIYIQQ |
Parental | IQSKDVELTSMKGEVTSMKKVLEEYKKK-FSDI-SEKLMERNRQYQKLQGLYDSLRLRNITIANHEGTLE |
IQSKDVELT..KG..TSMKKVL.E..K..F.DI...K.ME.....QKLQ.L.DSLRL.NIT..N.E.T.E | |
Retrocopy | IQSKDVELTFIKGGITSMKKVLKEHNKN>FTDI>FKKCMECSHKCQKLQSLCDSLRL*NITVTNQEHTFE |
Parental | PSMIAQSGVLGFPLGNNSRFPLDNTPVRNRGDGDGDFQFK |
.S.IAQ.GV.GF.LG.N....LD..PV.N.GDGD.DFQF. | |
Retrocopy | SSIIAQYGVSGFSLGHNAKCLLDSAPV*NLGDGDRDFQFR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 3 .92 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 1 .82 RPM |
SRP007412_cerebellum | 0 .00 RPM | 12 .08 RPM |
SRP007412_heart | 0 .00 RPM | 4 .12 RPM |
SRP007412_kidney | 0 .00 RPM | 8 .45 RPM |
SRP007412_liver | 0 .00 RPM | 0 .40 RPM |
SRP007412_testis | 0 .00 RPM | 5 .58 RPM |
Species | RetrogeneDB ID |
---|---|
Callithrix jacchus | retro_cjac_4197 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000009967 | 2 retrocopies | |
Homo sapiens | ENSG00000100814 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000004586 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000000893 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000016251 | 2 retrocopies |
retro_mmul_2617 , retro_mmul_371,
|
Nomascus leucogenys | ENSNLEG00000010636 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006088 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000026056 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000004394 | 1 retrocopy |