RetrogeneDB ID: | retro_hsap_829 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 11:122888346..122889369(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000213184 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SAE1 | ||
Ensembl ID: | ENSG00000142230 | ||
Aliases: | SAE1, AOS1, HSPC140, SUA1, UBLE1A | ||
Description: | SUMO1 activating enzyme subunit 1 [Source:HGNC Symbol;Acc:30660] |
Percent Identity: | 88.79 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | MVEKEEAGGGISEEEA-AQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHE |
MVEKEEAGGGIS.EEA.AQYD.QI.LWGLEA.K.LRAS.VLL.G.KGLGAEIAKNLILAGVKGLTMLDH. | |
Retrocopy | MVEKEEAGGGISQEEA>AQYDQQICLWGLEAPKWLRASQVLLAGMKGLGAEIAKNLILAGVKGLTMLDHK |
Parental | QVTPEDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFTQFDAVC-LTCCSRDV |
Q..PE.PGAQFLIR.GSVGRNRAEASLERAQNLNPMVDVK.DTEDIEKKPESFFTQFDAVC.LTCCSR.V | |
Retrocopy | QISPEEPGAQFLIRIGSVGRNRAEASLERAQNLNPMVDVKLDTEDIEKKPESFFTQFDAVC<LTCCSRAV |
Parental | IVKVDQICHKNSIKFFTGDVFGYHGYTFANLGEHEFVEEKTKVAKVSQGVEDGPDTKRAKLDSSETTMVK |
IVKVDQICHKNSIKFF.GDVF.YHGYTFANLGEHEFVEEKTKVAKVSQGVEDGPDTKR.KLDSSETTMVK | |
Retrocopy | IVKVDQICHKNSIKFFAGDVFSYHGYTFANLGEHEFVEEKTKVAKVSQGVEDGPDTKRVKLDSSETTMVK |
Parental | KKVVFCPVKEALEVDWSSEKAKAALKRTTSDYFLLQVLLKFRTDKGRDPSSDTYEEDSELLLQIRNDVLD |
KKVVFCPVKEALEVDWSS.KAKAALKRTTSD.FLLQVLLKFRTDKGRDPSSDT..EDSELLLQIRNDVLD | |
Retrocopy | KKVVFCPVKEALEVDWSSKKAKAALKRTTSDHFLLQVLLKFRTDKGRDPSSDTHGEDSELLLQIRNDVLD |
Parental | SLGISPDLLPEDFVRYCFSEMAPVCAVVGGILAQEIVKALSQRDPPHNNFFFFDGMKGNGIVECLGPK |
SLGI.PD.....F..Y.FSEMAPVCAVVGGILAQEIVKALSQ.DPPHN..FFF.GMKGNGI.E.LGPK | |
Retrocopy | SLGIIPD---PRFITYFFSEMAPVCAVVGGILAQEIVKALSQQDPPHN--FFFNGMKGNGILEWLGPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 61 .54 RPM |
bodymap2_adrenal | 0 .02 RPM | 64 .36 RPM |
bodymap2_brain | 0 .00 RPM | 67 .30 RPM |
bodymap2_breast | 0 .00 RPM | 50 .97 RPM |
bodymap2_colon | 0 .00 RPM | 115 .15 RPM |
bodymap2_heart | 0 .00 RPM | 27 .41 RPM |
bodymap2_kidney | 0 .00 RPM | 39 .62 RPM |
bodymap2_liver | 0 .00 RPM | 22 .94 RPM |
bodymap2_lung | 0 .00 RPM | 52 .55 RPM |
bodymap2_lymph_node | 0 .00 RPM | 58 .42 RPM |
bodymap2_ovary | 0 .04 RPM | 71 .52 RPM |
bodymap2_prostate | 0 .00 RPM | 109 .22 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 47 .83 RPM |
bodymap2_testis | 0 .00 RPM | 103 .26 RPM |
bodymap2_thyroid | 0 .13 RPM | 86 .76 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 59 .87 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_579 |
Gorilla gorilla | retro_ggor_679 |
Pongo abelii | retro_pabe_742 |
Macaca mulatta | retro_mmul_1087 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000004180 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000012199 | 1 retrocopy | |
Homo sapiens | ENSG00000142230 | 1 retrocopy |
retro_hsap_829 ,
|
Gorilla gorilla | ENSGGOG00000013078 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009506 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002965 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002966 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010168 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011202 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .02 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .02 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .02 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .02 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .03 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |