RetrogeneDB ID: retro_nleu_262

Retrocopy location

• Organism: Gibbon (Nomascus leucogenys)
• Coordinates: GL397262.1:56582826..56583141(+)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSNLEG00000007418
• Aliases: None
• Status: KNOWN_PSEUDOGENE

Parental gene information

• Parental gene symbol: None
• Ensembl ID: ENSNLEG00000002966
• Aliases: None
• Description: None

Sequence

>retro_nleu_262
TTTCTCCTTCAAGTGCTCCTAAAGCTCCACACAGATAAAGGAAGAGATCCCAGTTCTCATACATATGGGGAAGATTCCAA
GTTGTTGCTCCAGATACGAAACGATGTGCTTGACTCACTGGGTATTAGTCCTGACCTGCTTCCTGAGGACTTTATCACGT
ACTGCTTCTCCGAGATGACCCCAGTGTGTGCGGTGGTTGGAGGGATTTTGGCACAGGAAATTGTGAAGGCCCTGTCTCAG
CAGGACCCTCCTCACAACTTCTTCTTCTTCAATGGCATGAAGGGGAATGGGATTGTGGAGTGGCTTGGCCCCAAG

Alignment

ORF - retro_nleu_262 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 85.85 %
• Parental protein coverage: 99.07 %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  FFFPVLLKFRTDKGRDPSSDTYEEDSELLLQIRNDVLDSLGISPDLLPEDFVRYCFSEMAPVCAVVGGIL
          F...VLLK..TDKGRDPSS.TY.EDS.LLLQIRNDVLDSLGISPDLLPEDF..YCFSEM.PVCAVVGGIL
Retrocopy FLLQVLLKLHTDKGRDPSSHTYGEDSKLLLQIRNDVLDSLGISPDLLPEDFITYCFSEMTPVCAVVGGIL

Parental  AQEIVKALSQRDPPHNNFFFFDGMKGNGIVECLGPK
          AQEIVKALSQ.DPPH.NFFFF.GMKGNGIVE.LGPK
Retrocopy AQEIVKALSQQDPPH-NFFFFNGMKGNGIVEWLGPK

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Nomascus leucogenys was not studied using RNA-Seq expression data.

ChIP-Seq

Nomascus leucogenys was not studied using ChIP-Seq data.

EST

Nomascus leucogenys was not studied using EST data.

TSS

Nomascus leucogenys was not studied using FANTOM5 data.

Lab

retro_nleu_262 was not experimentally validated.

Homology

Retrocopy orthology:

Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 8 parental genes, and 8 retrocopies.

Species	Parental gene accession	Retrocopies number
Canis familiaris	ENSCAFG00000004180	1 retrocopy	retro_cfam_1705,
Dipodomys ordii	ENSDORG00000012199	1 retrocopy	retro_dord_638,
Homo sapiens	ENSG00000142230	1 retrocopy	retro_hsap_829,
Gorilla gorilla	ENSGGOG00000013078	1 retrocopy	retro_ggor_679,
Macaca mulatta	ENSMMUG00000009506	1 retrocopy	retro_mmul_1087,
Nomascus leucogenys	ENSNLEG00000002966	1 retrocopy	retro_nleu_262 ,
Pongo abelii	ENSPPYG00000010168	1 retrocopy	retro_pabe_742,
Pan troglodytes	ENSPTRG00000011202	1 retrocopy	retro_ptro_579,