RetrogeneDB ID: | retro_mmul_1087 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 14:121373054..121373856(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000004694 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.672 | ||
Ensembl ID: | ENSMMUG00000009506 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.25 % |
Parental protein coverage: | 85.35 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | QFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPESFFTQFDAVCLTCCSRDVIVKVDQICHK |
QFLIRTGSVG.NRAEASLE.AQNLNPMVDVKVDTEDI.KKPESFFT.FDAVCLTCCSRDVIVKVDQICHK | |
Retrocopy | QFLIRTGSVGGNRAEASLEQAQNLNPMVDVKVDTEDIQKKPESFFTHFDAVCLTCCSRDVIVKVDQICHK |
Parental | NSIKFFTGDVFGYHGYTFANLGEHEFVEE-KTKIAKVSQGVEDGPDTKRAKLDSSETTMVKKKVVFCPVK |
NSIKFFTGD.FGYHGYTFANLGEHEFVEE.K.K..K.......G....R.KLDSS.TTMVKKKVVFCPVK | |
Retrocopy | NSIKFFTGDAFGYHGYTFANLGEHEFVEE>KLKLPKLAKE*KMGL-IPRVKLDSSKTTMVKKKVVFCPVK |
Parental | EALEVDWSSEKAKAALKRTTSDYFLLQVLLKFRTDKGRDPSSDTYEEDSELLLQIRNDVLDSLGISPDLL |
E.LEVDWSS.KAKA.LK.TTS..FLLQVLLKFRT.KGRDPSSDTY.EDSELLLQIRNDVLDS.GISPDLL | |
Retrocopy | EVLEVDWSSGKAKATLKHTTSGHFLLQVLLKFRTEKGRDPSSDTYGEDSELLLQIRNDVLDSPGISPDLL |
Parental | PEDFVSYCFSEMAPVCAVVGGILAQEIVKALSQRDPPHNNFFFFDGMKGNGIVECLGPK |
.ED.V.YCFS.MAPVCAVVGGILAQEIVKALSQ.DPPHNNFFFF.GMKGNGIVECLGPK | |
Retrocopy | SEDLVRYCFSKMAPVCAVVGGILAQEIVKALSQWDPPHNNFFFFYGMKGNGIVECLGPK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 140 .96 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 173 .73 RPM |
SRP007412_cerebellum | 0 .06 RPM | 69 .03 RPM |
SRP007412_heart | 0 .00 RPM | 38 .63 RPM |
SRP007412_kidney | 0 .00 RPM | 39 .55 RPM |
SRP007412_liver | 0 .00 RPM | 24 .26 RPM |
SRP007412_testis | 0 .04 RPM | 167 .81 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_829 |
Pan troglodytes | retro_ptro_579 |
Gorilla gorilla | retro_ggor_679 |
Pongo abelii | retro_pabe_742 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000004180 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000012199 | 1 retrocopy | |
Homo sapiens | ENSG00000142230 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000013078 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009506 | 1 retrocopy |
retro_mmul_1087 ,
|
Nomascus leucogenys | ENSNLEG00000002965 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002966 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000010168 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000011202 | 1 retrocopy |