RetrogeneDB ID: | retro_hsap_905 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 11:83525501..83526488(-) | ||
Located in intron of: | ENSG00000150672 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000250257 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHAL6A | ||
Ensembl ID: | ENSG00000166800 | ||
Aliases: | LDHAL6A, LDH6A | ||
Description: | lactate dehydrogenase A-like 6A [Source:HGNC Symbol;Acc:28335] |
Percent Identity: | 65. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 7 |
Parental | MATIKSELIKNFAEEEAIHHNKISIVGTGSVGVACAISILLKGLSDELVLVDVDEGK-LKG-ETMDLQHG |
M.TI..E.I.NFA.EE.IHH.K.SI..TGSV..A.AI..LLK.L.DE...V.VD.G....G.ETMDL.HG | |
Retrocopy | MVTIQNEFIENFASEEVIHHSKVSIIRTGSVSMARAITMLLKDLRDEVAFVAVDNGE<IEGCETMDLKHG |
Parental | SPFMKMPNIVSSKDYLVTANSNLVIITAGARQ-KKGETRLDLVQRNVSIFKLMIPNITQYSPH-CKLLIV |
S.F.K.P...SSKDYL..ANSNLVIIT.GA.Q.KK......LV..NV.I.KLM..NITQYSP..CKL.IV | |
Retrocopy | SLFLKLPDSASSKDYLISANSNLVIITSGACQ>KKVK-HFNLVSLNVAIVKLMMSNITQYSPA<CKL-IV |
Parental | TNPVDILTYVAWKLSGFPKNRVIGSGCNLDSARFRYFIGQRLGIHSESCHGLILGEHGDSSVPVWSGVNI |
..PVDIL.YVA.KLS.F.K...IG.GCNLD.A.F.....Q.LGIHS.SCHG.I.GEHGDSSVPVWSGVNI | |
Retrocopy | SSPVDILIYVA*KLSTFFKTHIIGNGCNLDTAHFHFLTVQVLGIHSGSCHGWIFGEHGDSSVPVWSGVNI |
Parental | AGVPLKDLNPDIGTDKDPEQ-WENVHKKVISSGYEMVKMKGYTSWGISLSVADLTESILKNLRRVHPVST |
AGVPLKDLN.D.G.D.D.EQ..ENVHK.VI.S.YE..KMKGYTSW.I..SV.D.TESIL.N.RR.H.VST | |
Retrocopy | AGVPLKDLNSDKGIDQDLEQ>GENVHKEVIASAYEIMKMKGYTSWAIGPSVTD*TESILENPRRAHSVST |
Parental | -LSKGLYGINEDIFLSVPCI-LGENGITDLIKVKLTLEEEACLQKSAETLWE-IQKELKL |
...KGLYG.N.D.F.SVP.I.L.ENG..DL..VKLTLE..A.L..S.ETLWE.IQK.LKL | |
Retrocopy | <IIKGLYGMN-DVFFSVPRI<LRENGLADLTQVKLTLEDVAHL*RSTETLWE<IQKKLKL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 0 .24 RPM |
bodymap2_adrenal | 0 .00 RPM | 0 .84 RPM |
bodymap2_brain | 0 .21 RPM | 0 .59 RPM |
bodymap2_breast | 0 .00 RPM | 0 .16 RPM |
bodymap2_colon | 0 .00 RPM | 0 .04 RPM |
bodymap2_heart | 0 .00 RPM | 0 .06 RPM |
bodymap2_kidney | 0 .00 RPM | 0 .97 RPM |
bodymap2_liver | 0 .00 RPM | 0 .00 RPM |
bodymap2_lung | 0 .00 RPM | 0 .00 RPM |
bodymap2_lymph_node | 0 .00 RPM | 0 .27 RPM |
bodymap2_ovary | 0 .00 RPM | 0 .71 RPM |
bodymap2_prostate | 0 .00 RPM | 0 .00 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 0 .00 RPM |
bodymap2_testis | 0 .00 RPM | 7 .33 RPM |
bodymap2_thyroid | 0 .00 RPM | 0 .79 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 0 .45 RPM |
Species | RetrogeneDB ID |
---|---|
Pongo abelii | retro_pabe_779 |
Macaca mulatta | retro_mmul_1111 |
Equus caballus | retro_ecab_933 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007067 | 2 retrocopies | |
Homo sapiens | ENSG00000111716 | 1 retrocopy | |
Homo sapiens | ENSG00000134333 | 5 retrocopies | |
Homo sapiens | ENSG00000166800 | 2 retrocopies |
retro_hsap_42, retro_hsap_905 ,
|
Macaca mulatta | ENSMMUG00000014614 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017780 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000009261 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000003435 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000003423 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000008062 | 4 retrocopies |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |