RetrogeneDB ID: | retro_mmul_1111 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 14:82084490..82085477(-) | ||
Located in intron of: | ENSMMUG00000007921 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHAL6A | ||
Ensembl ID: | ENSMMUG00000014614 | ||
Aliases: | None | ||
Description: | L-lactate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F7GNJ6] |
Percent Identity: | 62.06 % |
Parental protein coverage: | 99.7 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 7 |
Parental | MATVKSELIKNFTKEEAIHHNKISIVGTGSVGVACAISILLKGLSDELVLVDADEGK-LKG-ETMDLQHG |
M.T...E.I.NF..EE.I.H.K.SI..TGSV..A.A...LLK.L.D.L..VD.D.G....G.ETMDL..G | |
Retrocopy | MVTIQNEFIENFASEEVINHSKVSIIRTGSVSMAHAVTMLLKDLRD*LAFVDVDNGE<IEGCETMDLKQG |
Parental | SPFMKMPNIVSSKDYLVTANSNLVIITAGARQ-KKGETRLDLVQRNVSIFKLMIPNITQYSPH-CKLLIV |
S.F.K.PN.VSSKDYL..ANSNLVIIT.GA.Q.KK......LV..NV.IFKLMI.NITQYSP..CKL.IV | |
Retrocopy | SLFLKLPNSVSSKDYLISANSNLVIITSGACQ>KKVK-HFNLVSLNVAIFKLMISNITQYSPA<CKL-IV |
Parental | TNPVDILTYVAWKLSAFPKNRVIGSGCNLDSARFRYFIGQRLGIHSESCHGLILGEHGDSSVPVWSGVNI |
..PVDIL.YVAWKLS.F.K...IG.G.NLD.A.F.....Q.LGIHS.SCHG.I.GEH.DS.VPVWS.VNI | |
Retrocopy | SSPVDILSYVAWKLSTFSKTHIIGNGYNLDTAYFHFLTVQMLGIHSGSCHGWIFGEHRDSNVPVWSAVNI |
Parental | AGVPLKDLNPDIGTDKDPEQ-WENVHKKVISSGYEMVKMKGYTSWGISLSVADLTESILKNLRRVHPVST |
.G.PLKDLN.D.G.....EQ..ENVHK.VI.S.YE..KMKGYTSW.I..SV.D.TESIL.N.RRVH.VST | |
Retrocopy | TGIPLKDLNSDRGINQNLEQ>GENVHKEVIASAYEIMKMKGYTSWAIGPSVTD*TESILGNPRRVHSVST |
Parental | -LSKGLYGINEEIFLSVPCI-LGENGITDLIKVKLTLEEEACLQKSA-ETLWE-IQKELK |
...K.L.G.N.E.FL.VPCI.L.ENG..DL..VKLTLEE.A.L..S...TL.E.IQK.LK | |
Retrocopy | <IIKSLCGMN-EVFLNVPCI<LRENGLADLTQVKLTLEEAAHL*RSTLQTLSE<IQKKLK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .11 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .13 RPM |
SRP007412_heart | 0 .00 RPM | 0 .18 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .12 RPM |
SRP007412_liver | 0 .00 RPM | 0 .00 RPM |
SRP007412_testis | 0 .00 RPM | 0 .26 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_905 |
Pongo abelii | retro_pabe_779 |
Equus caballus | retro_ecab_933 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007067 | 2 retrocopies | |
Homo sapiens | ENSG00000166800 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000002679 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000014614 | 2 retrocopies |
retro_mmul_1111 , retro_mmul_261,
|
Macaca mulatta | ENSMMUG00000031024 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017780 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000009261 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000003435 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000003423 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000008062 | 4 retrocopies |