RetrogeneDB ID: | retro_mmul_261 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 7:37578884..37580030(+) | ||
Located in intron of: | ENSMMUG00000012933 | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000012934 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHAL6A | ||
Ensembl ID: | ENSMMUG00000014614 | ||
Aliases: | None | ||
Description: | L-lactate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:F7GNJ6] |
Percent Identity: | 83.38 % |
Parental protein coverage: | 99.7 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MATVKSELIKNFTKEEAIHHNKISIVGTGSVGVACAISILLKGLSDELVLVDADEGKLKGETMDLQHGSP |
MATVKSELI..FT.EE..HH.K.SI.GTGSVG.ACAISILLKGL.DEL.LVD.DEGKLKGETMDLQHGS. | |
Retrocopy | MATVKSELIERFTSEEPVHHSKVSIIGTGSVGMACAISILLKGLIDELALVDVDEGKLKGETMDLQHGSS |
Parental | FMKMPNIVSSKDYLVTANSNLVIITAGARQKKGETRLDLVQRNVSIFKLMIPNITQYSPHCKLLIVTNPV |
F.KMPNIV.SKDY.VTANSNLVIITAGARQ.KGETRL.LVQRNV..FKLMI.NI.Q.SPHCKL.IV.NPV | |
Retrocopy | FTKMPNIVCSKDYIVTANSNLVIITAGARQEKGETRLNLVQRNVALFKLMISNIVQHSPHCKLIIVSNPV |
Parental | DILTYVAWKLSAFPKNRVIGSGCNLDSARFRYFIGQRLGIHSESCHGLILGEHGDSSVPVWSGVNIAGVP |
DIL.YVAWKLSAFPKNRVIGSGCNLD.ARFR..IGQ.LGIHSESCHG.ILGEHGDSSVPVWSGVNIAGVP | |
Retrocopy | DILSYVAWKLSAFPKNRVIGSGCNLDTARFRFLIGQKLGIHSESCHGWILGEHGDSSVPVWSGVNIAGVP |
Parental | LKDLNPDIGTDKDPEQWENVHKKVISSGYEMVKMKGYTSWGISLSVADLTESILKNLRRVHPVSTLSKGL |
LKDLN.DIGTDKDPEQW.NVH..VI...YE..KMKGYTSW.I.LSVADLTESILKNLRR.HPVST..KGL | |
Retrocopy | LKDLNSDIGTDKDPEQWKNVHEEVIATAYEIIKMKGYTSWAIGLSVADLTESILKNLRRTHPVSTIIKGL |
Parental | YGINEEIFLSVPCILGENGITDLIKVKLTLEEEACLQKSAETLWEIQKELK |
YGI.EE.FLS.PCILGENGIT.LIK.KLT.EEE..L.KSA.TLWEIQKELK | |
Retrocopy | YGIDEEVFLSIPCILGENGITHLIKIKLTPEEEDRLKKSAKTLWEIQKELK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 0 .11 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 0 .00 RPM |
SRP007412_cerebellum | 0 .00 RPM | 0 .13 RPM |
SRP007412_heart | 0 .12 RPM | 0 .18 RPM |
SRP007412_kidney | 0 .35 RPM | 0 .12 RPM |
SRP007412_liver | 0 .08 RPM | 0 .00 RPM |
SRP007412_testis | 45 .61 RPM | 0 .26 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_42 |
Pan troglodytes | retro_ptro_62 |
Pongo abelii | retro_pabe_203 |
Callithrix jacchus | retro_cjac_164 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000007067 | 2 retrocopies | |
Homo sapiens | ENSG00000166800 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000002679 | 4 retrocopies | |
Macaca mulatta | ENSMMUG00000014614 | 2 retrocopies |
retro_mmul_1111, retro_mmul_261 ,
|
Macaca mulatta | ENSMMUG00000031024 | 2 retrocopies | |
Nomascus leucogenys | ENSNLEG00000017780 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000009261 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000003435 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000003423 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000008062 | 4 retrocopies |