Parental gene: | LDHAL6A, ENSPPYG00000003435 |
| Aliases: | None |
| Description: | lactate dehydrogenase A-like 6A [Source:HGNC Symbol;Acc:28335] |
| Organism: | Orangutan (Pongo abelii) |
| Coordinates: | 11:51651858..51676135(-) |
>ENSPPYG00000003435
ATGGCAACTGTCAAGAGTGAACTTATTAAGAATTTCGCGGAAGAGGAGGCCATTCATCACAATAAGATCTCCATTGTAGG
AACTGGATCGGTTGGTGTGGCTTGTGCTATCAGCATCTTATTAAAAGGTTTGAGTGATGAACTTGTCCTTGTGGATGTTG
ATGAAGGCAAACTGAAGGGCGAGACAATGGATCTTCAACATGGCAGCCCTTTTATGAAAATGCCAAATATTGTCTCCAGC
AAAGATTACCTGGTCACTGCAAACTCCAATCTAGTGATTATCACGGCAGGTGCACGCCAGAAAAAAGGAGAAACACGCCT
TGATTTAGTCCAGCGAAATGTGTCCATCTTTAAATTAATGATTCCCAATATTACCCAGTACAGTCCTCACTGCAAACTGC
TTATTGTTACTAATCCAGTGGATATCTTAACTTATGTAGCCTGGAAGTTGAGTGCATTTCCCAAAAACCGTGTTATTGGA
AGTGGTTGTAATCTGGACTCTGCTCGTTTTCGTTACTTTATTGGGCAAAGGCTTGGCATCCACTCTGAAAGCTGTCATGG
GCTGATCCTTGGAGAGCATGGCGACTCAAGTGTGCCTGTGTGGAGTGGTGTGAACATTGCTGGTGTCCCTCTGAAGGATC
TGAACCCAGATATAGGAACTGATAAAGATCCTGAGCAGTGGGAAAATGTCCACAAAAAAGTGATTTCCAGTGGCTATGAG
ATGGTCAAAATGAAAGGTTACACTTCTTGGGGCATTAGCCTATCTGTAGCTGATTTAACAGAAAGTATTTTGAAGAATCT
TAGGAGAGTGCATCCAGTTTCTACCCTAAGTAAGGGCCTCTATGGAATAAATGAAGAAATATTCCTTAGTGTCCCATGTA
TCCTGGGAGAGAATGGTATCACAGACCTCATAAAAGTAAAACTGACTTTTGAAGAGGAGGCCTGCTTGCAAAAGAGTGCA
GAAACACTTTGGGAAATTCAGAAGGAGCTCAAGCTTTAA
ATGGCAACTGTCAAGAGTGAACTTATTAAGAATTTCGCGGAAGAGGAGGCCATTCATCACAATAAGATCTCCATTGTAGG
AACTGGATCGGTTGGTGTGGCTTGTGCTATCAGCATCTTATTAAAAGGTTTGAGTGATGAACTTGTCCTTGTGGATGTTG
ATGAAGGCAAACTGAAGGGCGAGACAATGGATCTTCAACATGGCAGCCCTTTTATGAAAATGCCAAATATTGTCTCCAGC
AAAGATTACCTGGTCACTGCAAACTCCAATCTAGTGATTATCACGGCAGGTGCACGCCAGAAAAAAGGAGAAACACGCCT
TGATTTAGTCCAGCGAAATGTGTCCATCTTTAAATTAATGATTCCCAATATTACCCAGTACAGTCCTCACTGCAAACTGC
TTATTGTTACTAATCCAGTGGATATCTTAACTTATGTAGCCTGGAAGTTGAGTGCATTTCCCAAAAACCGTGTTATTGGA
AGTGGTTGTAATCTGGACTCTGCTCGTTTTCGTTACTTTATTGGGCAAAGGCTTGGCATCCACTCTGAAAGCTGTCATGG
GCTGATCCTTGGAGAGCATGGCGACTCAAGTGTGCCTGTGTGGAGTGGTGTGAACATTGCTGGTGTCCCTCTGAAGGATC
TGAACCCAGATATAGGAACTGATAAAGATCCTGAGCAGTGGGAAAATGTCCACAAAAAAGTGATTTCCAGTGGCTATGAG
ATGGTCAAAATGAAAGGTTACACTTCTTGGGGCATTAGCCTATCTGTAGCTGATTTAACAGAAAGTATTTTGAAGAATCT
TAGGAGAGTGCATCCAGTTTCTACCCTAAGTAAGGGCCTCTATGGAATAAATGAAGAAATATTCCTTAGTGTCCCATGTA
TCCTGGGAGAGAATGGTATCACAGACCTCATAAAAGTAAAACTGACTTTTGAAGAGGAGGCCTGCTTGCAAAAGAGTGCA
GAAACACTTTGGGAAATTCAGAAGGAGCTCAAGCTTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 0 .44 RPM |
| SRP007412_cerebellum | 1 .34 RPM |
| SRP007412_heart | 0 .12 RPM |
| SRP007412_kidney | 0 .30 RPM |
| SRP007412_liver | 0 .28 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000007067 | ortholog_one2one | 2 retrogenes | |
| Homo sapiens | ENSG00000166800 | ortholog_one2one | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000014614 | ortholog_one2one | 2 retrogenes | |
| Nomascus leucogenys | ENSNLEG00000017780 | ortholog_one2one | 2 retrogenes | |
| Otolemur garnettii | ENSOGAG00000009261 | ortholog_one2one | 1 retrogene | |
| Pongo abelii | ENSPPYG00000003437 | within_species_paralog | 5 retrogenes | |
| Pongo abelii | ENSPPYG00000004356 | within_species_paralog | 3 retrogenes | |
| Pan troglodytes | ENSPTRG00000003423 | ortholog_one2one | 1 retrogene | |
| Tarsius syrichta | ENSTSYG00000008062 | possible_ortholog | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_pabe_203 | 84.04 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_pabe_779 | 64.12 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPPYG00000003435 retrocopies