RetrogeneDB ID: | retro_itri_1208 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393400.1:1935505..1935827(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000028442 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 51.35 % |
Parental protein coverage: | 51.89 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 1 |
Parental | YMIERPEPEFQDLNEKARALKQILSKIPDEINDRVRFLQTIKDIASAIKELLDTVNNVFKKYQ-YQNRRA |
..IE...PEFQDL.EK......I..KIPDEIND........K.I...IKE..D...NVF..Y..Y.N.R. | |
Retrocopy | WLIE*QHPEFQDLHEKG-LIHKIPNKIPDEINDIK--ISAVKLIDNSIKENFDILDNVFSLYK>YHNYRE |
Parental | LEHQKKEFVKYSKSFSDTLKTYFKDGKAINVFISANRLIHQ |
.E..KK.F..Y.KSFS.TLKTYF.DGKA.N.FIS....I.Q | |
Retrocopy | VE**KKVFIMYFKSFSNTLKTYF*DGKAMNLFISSS*VIYQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |