RetrogeneDB ID: | retro_itri_1377 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393465.1:1013031..1013415(-) | ||
Located in intron of: | ENSSTOG00000001842 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000028442 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.92 % |
Parental protein coverage: | 61.32 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | RMTMEEMKNEAETTSMVSMPLYAVMYPVFNELERVNLSAAQTLRAA-FIKAEKENPGLTQDIIMKILEKK |
R.TMEEMKNEAETTS.VSMPL..V.YPVFNELER..LSA..T..A..F.KAEKENPG.TQD..MKILE.. | |
Retrocopy | RLTMEEMKNEAETTSKVSMPL*-VKYPVFNELERIHLSAS*TSKAT<FLKAEKENPGFTQDTTMKILEXX |
Parental | SVEVNFTESLLRMAADDVEEYMIERP-EPEFQ-DLNEKARALKQILSKIPDEINDRVRFLQTI |
...VNF.E.LL.MAA.D.E..M.E.P..PEFQ.D.N.KA.ALK.ILSK.PDE..DR.RFLQ.. | |
Retrocopy | XIDVNFMETLLHMAANDGEKHMTE*P<KPEFQ<DQN*KAEALK*ILSKLPDETSDRTRFLQSM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |