RetrogeneDB ID: | retro_mmul_2288 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 8:53369442..53369905(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MMU.2243 | ||
Ensembl ID: | ENSMMUG00000005938 | ||
Aliases: | None | ||
Description: | programmed cell death 10 [Source:RefSeq peptide;Acc:NP_001253339] |
Percent Identity: | 67.09 % |
Parental protein coverage: | 73.58 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | RVNLSAAQTLRAAFIKAEKENPGLTQDIIMKILEKKSVEVNFTESLLRMAADDVEEYMIERPEPEFQDLN |
RVNLSAAQ.LR.AFIKA.KENP.LTQ.I....LE.K......T..LL.MAA..V....IE..EPEFQD.N | |
Retrocopy | RVNLSAAQILRVAFIKANKENPSLTQYIVLATLETKTINSKITGFLLHMAAVNV***IIE*TEPEFQDAN |
Parental | E-KARALKQILSKIP-DEINDRVRFLQTIKDIASAIKELLDTVNNVFKKYQYQNRRALEHQKKEFVKYSK |
E.KA.AL.QI.SK.P..E.NDRVR.LQ.IKDI.SAIKEL.D.VNNVF.KYQYQN..ALEHQ.K.F.KYSK | |
Retrocopy | E<KAQALTQIHSKCP<SELNDRVRILQAIKDISSAIKEL-DIVNNVFEKYQYQNHGALEHQRKVFLKYSK |
Parental | SFSDTLKTYFKDGKAINV |
SF...LKTYFKD.KA.NV | |
Retrocopy | SFNGILKTYFKDDKATNV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 15 .80 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 10 .71 RPM |
SRP007412_cerebellum | 0 .00 RPM | 11 .88 RPM |
SRP007412_heart | 0 .00 RPM | 8 .13 RPM |
SRP007412_kidney | 0 .00 RPM | 14 .55 RPM |
SRP007412_liver | 0 .00 RPM | 5 .03 RPM |
SRP007412_testis | 0 .04 RPM | 29 .85 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3953 |
Pan troglodytes | retro_ptro_2683 |
Gorilla gorilla | retro_ggor_2656 |
Pongo abelii | retro_pabe_3257 |