RetrogeneDB ID: | retro_itri_322 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393284.1:21747415..21748045(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000028442 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.59 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | MRMTMEEMKNEAETTSMVSMPLYAVMYPVFNELERVNLSAAQTLRAAFIKAEKENPGLTQDIIMKILEKK |
MRMTMEEMKNE.ETTSMVSM.LY.VMYPVFNELERVNLSAAQTLRAAFIKAEKENPGLTQDIIMKILE.K | |
Retrocopy | MRMTMEEMKNETETTSMVSMHLYTVMYPVFNELERVNLSAAQTLRAAFIKAEKENPGLTQDIIMKILERK |
Parental | SVEVNFTESLLRMAADDVEEYMIERPEPEFQDLNEKARALKQILSKIPDEINDRVRFLQTIKDIASAIKE |
SVEVNFTES.LRMAADD.EEYM.E.PEPEFQDLNEKA.ALKQILSKIPDEINDRVRFLQTIKDI..AIKE | |
Retrocopy | SVEVNFTESFLRMAADDIEEYMTELPEPEFQDLNEKAKALKQILSKIPDEINDRVRFLQTIKDI--AIKE |
Parental | LLDTVNNVFKKYQYQNRRALE-HQKKEFVKYSKSFSDTLKTYFKDGKAINVFISANRLIHQT-NLILQTF |
LLDTVNNVFKKYQY.N.RALE...KKEFVKYSKSFSDTLKTYFKDGKAIN.FISANRLIHQT.NLILQTF | |
Retrocopy | LLDTVNNVFKKYQY*NSRALE<TKKKEFVKYSKSFSDTLKTYFKDGKAINMFISANRLIHQT>NLILQTF |
Parental | KTVA |
KTVA | |
Retrocopy | KTVA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |