RetrogeneDB ID: | retro_btau_713 | ||
Retrocopylocation | Organism: | Cow (Bos taurus) | |
Coordinates: | 18:8931851..8932256(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PDCD10 | ||
Ensembl ID: | ENSBTAG00000031709 | ||
Aliases: | None | ||
Description: | programmed cell death protein 10 [Source:RefSeq peptide;Acc:NP_001068727] |
Percent Identity: | 79.56 % |
Parental protein coverage: | 63.68 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | KNEAETTSMVSMPLYAVMYPVFNELERVNLSA-AQTLRAAFIKAE-KENPGLTQDIIMKILEKKSVEVNF |
..EAETTS.VSM.LYAVMYPVFNE.ERVNLS..AQTLR.AFIKAE.KENP.L.QDIIMKIL..K...VNF | |
Retrocopy | RDEAETTSVVSMTLYAVMYPVFNEIERVNLSE<AQTLRVAFIKAE>KENP*LIQDIIMKILGTKKCRVNF |
Parental | TESLLRMAADDVEEYMIERPEPEFQDLNEKARALKQILSKIPDEINDRVRFLQTIKDIASAIKELLD |
TESLL.M..DDVEEYMI..PE.EFQDLNEKA.ALKQIL.KIPDE.NDRVRFLQT.K.IASA.KELLD | |
Retrocopy | TESLLQMTVDDVEEYMIKQPESEFQDLNEKAQALKQILGKIPDETNDRVRFLQTVKEIASAVKELLD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
ERP005899_liver | 0 .00 RPM | 25 .38 RPM |
ERP005899_muscle | 0 .00 RPM | 23 .02 RPM |
SRP017611_brain | 0 .00 RPM | 17 .91 RPM |
SRP017611_kidney | 0 .00 RPM | 33 .61 RPM |
SRP017611_liver | 0 .00 RPM | 8 .91 RPM |
SRP030211_testis | 0 .00 RPM | 23 .99 RPM |