RetrogeneDB ID: | retro_itri_1611 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393572.1:573693..574250(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPP1R8 | ||
Ensembl ID: | ENSSTOG00000004381 | ||
Aliases: | None | ||
Description: | protein phosphatase 1, regulatory subunit 8 [Source:HGNC Symbol;Acc:9296] |
Percent Identity: | 75.39 % |
Parental protein coverage: | 53.56 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | DNLTEFNTAHNKRISTLTIEEGNLDIQRPKRKRKNSRVTFSEDDEIINPEDVD-PSVGRFRNMVQTAVVP |
.NL.E..T.HNK.ISTLTIEEGNLDIQRPK.KRKNS.VTFSE.DE.IN..DVD.P......NM.QTAVVP | |
Retrocopy | ENLIEIKTFHNKWISTLTIEEGNLDIQRPKKKRKNSQVTFSEGDEYINTKDVD>PQLS-LQNMLQTAVVP |
Parental | VKKKRVEGPGSLGLEESGSRRMQNFAFSGGLYGGLP-PTHSEAGSQPHGIHGTALIGGLPMPYPNLA-PD |
VKKK.VEGPGSLGLEESGSR.MQNFAFS..LY..LP..THS.AGSQPHGIHG.ALIG.LPMPYPNL..P. | |
Retrocopy | VKKKWVEGPGSLGLEESGSRCMQNFAFSDRLYWVLP<LTHSKAGSQPHGIHGIALIGCLPMPYPNLT<P* |
Parental | VDLTPVVPSAVNMNPTPNPAVYNPEAVNEPKKKKYAKEAWPGKKPTPSLLI |
.DLTP..PSAVN.N.TPNPAV.NPEA...P.KKKYAK.AW.GKKPT.SLLI | |
Retrocopy | WDLTPGLPSAVNVNLTPNPAVCNPEADKKP-KKKYAK*AWLGKKPTSSLLI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000012023 | 1 retrocopy | |
Homo sapiens | ENSG00000117751 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012062 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000017834 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006933 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000417 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000004381 | 2 retrocopies |
retro_itri_1611 , retro_itri_1704,
|