RetrogeneDB ID: | retro_ptro_296 | ||
Retrocopylocation | Organism: | Chimpanzee (Pan troglodytes) | |
Coordinates: | 1:48689132..48689961(-) | ||
Located in intron of: | ENSPTRG00000000718 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPP1R8 | ||
Ensembl ID: | ENSPTRG00000000417 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 81.72 % |
Parental protein coverage: | 78.92 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MAAAANSGSSLPLFDCPTWAGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRV |
M.A..NSGSSLPL..CPTWAGKPPPG.HLD.VK.DKLIEKLII.EKKYYLFG.N.DLCDFT..HQSCS.. | |
Retrocopy | MVAVTNSGSSLPLLHCPTWAGKPPPG*HLDLVKQDKLIEKLIIGEKKYYLFGINLDLCDFTTEHQSCSWI |
Parental | HAALVYHKHLKRVFLIDLNSTHGT-FLGHIRLEPHKPQQIPIDSTVSFGASTRAYTLREKPQTLPSAVKG |
H.ALVYHKHL.RVFLIDLNSTH.T.FLGHI.LEPHKPQQIPIDS.VSF..ST.AYTLRE....LP.A.KG | |
Retrocopy | HTALVYHKHLRRVFLIDLNSTHST<FLGHIQLEPHKPQQIPIDSRVSFDTSTGAYTLREILGPLPLALKG |
Parental | DEKMGGEDDELKGLLGLPEEETELDNLTEFNTAHNKRISTLTIEEGNL-DIQRPKRKRKNSRVTFSEDDE |
.EK.G.EDD.L.GLLGLPEEET.LDNLT.FNTAHNK.IST.TIEEGNL..I.RPKRKRKNSRVTFSEDDE | |
Retrocopy | VEKTGEEDD*LRGLLGLPEEETKLDNLT*FNTAHNKWISTFTIEEGNL<NIPRPKRKRKNSRVTFSEDDE |
Parental | IINPEDVDPSVGRFRNMVQTAVVPVKKKRVEGPGSLGLEESGSRRMQNFAFSGGLYGGLPPTHSEAGSQ |
IIN.E.VDPSV.RFRN.VQTAVVPVKKK..EGPGSLGLEESG.RRMQNFAF.GGLYGGL.PTHSEAGSQ | |
Retrocopy | IINSENVDPSVCRFRNIVQTAVVPVKKKLGEGPGSLGLEESGRRRMQNFAFRGGLYGGLCPTHSEAGSQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .20 RPM | 19 .45 RPM |
SRP007412_cerebellum | 0 .04 RPM | 31 .58 RPM |
SRP007412_heart | 0 .09 RPM | 13 .17 RPM |
SRP007412_kidney | 0 .08 RPM | 22 .78 RPM |
SRP007412_liver | 0 .00 RPM | 18 .53 RPM |
SRP007412_testis | 0 .21 RPM | 55 .54 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_380 |
Macaca mulatta | retro_mmul_491 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000012023 | 1 retrocopy | |
Homo sapiens | ENSG00000117751 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012062 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000017834 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006933 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000417 | 1 retrocopy |
retro_ptro_296 ,
|
Ictidomys tridecemlineatus | ENSSTOG00000004381 | 2 retrocopies |