RetrogeneDB ID: | retro_mmul_491 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:51209960..51210990(-) | ||
Located in intron of: | ENSMMUG00000009282 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPP1R8 | ||
Ensembl ID: | ENSMMUG00000006933 | ||
Aliases: | None | ||
Description: | nuclear inhibitor of protein phosphatase 1 [Source:RefSeq peptide;Acc:NP_001253391] |
Percent Identity: | 79.04 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | MAAAANSGSSLPLFDCPTWAGKPPPGLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRV |
M.A.ANSGSSL.L..CPTWAGKPPPG.HLD.VK.DKLIEKLII.E.KYYLFGRN.DLCDFT..HQSC.RV | |
Retrocopy | MVAVANSGSSLTLLHCPTWAGKPPPGRHLDAVK*DKLIEKLIIGESKYYLFGRNLDLCDFTTEHQSCTRV |
Parental | HAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSF-GASTRAYTLREKPQTLPSAVKG |
HAA.VYHKHL.RVFLIDLNSTH.TFLGH.RLEPHKPQQIPI.S.VS...ASTRAYTL.E..Q.LP.AVKG | |
Retrocopy | HAAFVYHKHLRRVFLIDLNSTHSTFLGHLRLEPHKPQQIPINSRVSL<DASTRAYTLCETLQPLPLAVKG |
Parental | DEKMGGEDDELKGLLGLPEEETELDNLTEFNTAHNKRISTLTIEEGNLDIQRPKRKRKNSRVTFSEDDEI |
.EKMG.EDDELKGLLGLPE.ET.LDNLT.FNTAHNK.ISTLTIEEGNL.I.RPKRKRKNS.VTFSEDDEI | |
Retrocopy | VEKMGEEDDELKGLLGLPEKETKLDNLT*FNTAHNKWISTLTIEEGNLGIPRPKRKRKNSWVTFSEDDEI |
Parental | INPEDVDPSVGRFRNMVQTAVVPVKKKRV-EGPGSLGLEESGSRRMQNFAFSGGLYGGLPPTHSEAGSQP |
IN.EDVDPSVGRFRN.VQTA.V.V.KK...EGPGSLGLEESG.RRMQNFAF.....GG.PP.......Q. | |
Retrocopy | INSEDVDPSVGRFRNLVQTAGVSVQKKQG<EGPGSLGLEESGRRRMQNFAFN----GGHPP---HTVKQT |
Parental | HGIHGTALIGGLPMPYPNLAPDVDLTPVVPSAVNMNPAPNPAVYNPEAVNEPKKKKYAKEAWPGKKPTPS |
...H.TALIGGL.MPYPNLA.DVDLTPVVP.AVN.NPAPN.AV.NPE.VNEPKKKKYAKE.WPGK.PT.S | |
Retrocopy | PSFHETALIGGLFMPYPNLASDVDLTPVVPAAVNTNPAPNLAVHNPETVNEPKKKKYAKETWPGKNPTSS |
Parental | LLI |
LLI | |
Retrocopy | LLI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 23 .87 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 22 .29 RPM |
SRP007412_cerebellum | 0 .00 RPM | 30 .61 RPM |
SRP007412_heart | 0 .00 RPM | 12 .48 RPM |
SRP007412_kidney | 0 .00 RPM | 18 .19 RPM |
SRP007412_liver | 0 .04 RPM | 9 .06 RPM |
SRP007412_testis | 0 .41 RPM | 27 .55 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_380 |
Pan troglodytes | retro_ptro_296 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000012023 | 1 retrocopy | |
Homo sapiens | ENSG00000117751 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012062 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000017834 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006933 | 1 retrocopy |
retro_mmul_491 ,
|
Pan troglodytes | ENSPTRG00000000417 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000004381 | 2 retrocopies |