RetrogeneDB ID: | retro_cfam_334 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 1:105458065..105458608(-) | ||
Located in intron of: | ENSCAFG00000023981 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PPP1R8 | ||
Ensembl ID: | ENSCAFG00000012023 | ||
Aliases: | None | ||
Description: | protein phosphatase 1, regulatory subunit 8 [Source:HGNC Symbol;Acc:9296] |
Percent Identity: | 59.57 % |
Parental protein coverage: | 64.49 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 6 |
Parental | EQRQQKLQKERLMNDFSAALNNFQAVQRRVSEK-EKESIARARAGSRLSAEERQRE-EQLVSFDGHEEWN |
......L.K..L.NDFS.A...F.AVQ....EK.EK.SIAR.R..S.LSAEERQRE.EQL..FDGH.... | |
Retrocopy | QMNNPELEKDGLLNDFSEAVKDF*AVQGTDLEK<EKKSIARVRGESPLSAEERQRE<EQLPLFDGHRSGT |
Parental | Q-MQSQEDEVA-ITEQDL-ELIKERETAIRQLEADILDVNQIFKDLAMMIHDQGDLIDSI--EANVESSE |
....SQE.EV..ITEQD..E.IKE.E.AI.QL..DILD..Q.FKDLAMMIHDQ.D.IDS....ANVESS. | |
Retrocopy | R>TESQENEVG>ITEQDR<EFIKE*EKAIWQLHTDILDAHQMFKDLAMMIHDQDDPIDSMHRKANVESSK |
Parental | VHVERATDQLQRAA-YYQ--KKSRKKICILVLVLSVIIVILVFIIWQI |
V...RAT.QLQ.AA.YYQ........ICILVL.L.VI.VILV..IWQI | |
Retrocopy | VLADRATGQLQQAA>YYQXXXXXSQNICILVLLLFVITVILV-LIWQI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .04 RPM | 86 .43 RPM |
SRP017611_brain | 0 .08 RPM | 63 .20 RPM |
SRP017611_kidney | 0 .00 RPM | 35 .66 RPM |
SRP017611_liver | 0 .15 RPM | 13 .63 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000005180 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000012023 | 1 retrocopy |
retro_cfam_334 ,
|
Homo sapiens | ENSG00000117751 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000012062 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000017834 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000006933 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000000417 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000004381 | 2 retrocopies |