RetrogeneDB ID: | retro_itri_1862 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH394246.1:38962..39820(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KLF4 | ||
Ensembl ID: | ENSSTOG00000022002 | ||
Aliases: | None | ||
Description: | Kruppel-like factor 4 (gut) [Source:HGNC Symbol;Acc:6348] |
Percent Identity: | 96.85 % |
Parental protein coverage: | 58.97 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | AELLRPELDPVYIPPQQPQPPGGGLMGKFVLKASLSAPGSEYGSPSVISVSKGSPDGSHPVVVAPYSSGP |
AELLRPELDPVYIPPQQPQPP.GGLMGKFVLKASLSAPGSEYGSPSVISVSKGSPDGSHPVVVAPYSSGP | |
Retrocopy | AELLRPELDPVYIPPQQPQPPRGGLMGKFVLKASLSAPGSEYGSPSVISVSKGSPDGSHPVVVAPYSSGP |
Parental | PRMCPKIKQEAVSSCTVGRPLEAHLGAGPPLSNGHRPSAHDFSLGRQLPSRTTPTLGPEELLSNRDCHSA |
PRMCPKIKQEAVSSCTVGRPLEAHLGAGPPLSNGHRPSAHDFSLG.QLPSRTTPTLGPEEL.SNRDCHS. | |
Retrocopy | PRMCPKIKQEAVSSCTVGRPLEAHLGAGPPLSNGHRPSAHDFSLGQQLPSRTTPTLGPEELPSNRDCHSV |
Parental | LPLPPGFHPHPGPNYPPFLSDQMQPQVPPLHYQELMPPGSCLPEEPKPKRGRRSWPRKRTATHTCDYAGC |
LPLPPGFHPHPGPN.PPFLSDQM.PQVPPLHYQELMPPGSCLPEEPKPKRGRRSWP.KRTATHTCDYAGC | |
Retrocopy | LPLPPGFHPHPGPN*PPFLSDQM*PQVPPLHYQELMPPGSCLPEEPKPKRGRRSWPQKRTATHTCDYAGC |
Parental | GKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLAL |
GKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY.KHTGHRPFQCQKCDRAFSR.DHLAL | |
Retrocopy | GKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYHKHTGHRPFQCQKCDRAFSRWDHLAL |
Parental | HMKRHF |
HMKRHF | |
Retrocopy | HMKRHF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000020355 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000019478 | 7 retrocopies | |
Rattus norvegicus | ENSRNOG00000016299 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000015926 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000022002 | 1 retrocopy |
retro_itri_1862 ,
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