>retro_pabe_3579
ATGGGGCAGCCACCTGGCGAGTCTGACATGGCTGTCAGCGACGCGCTGCTCCCATCTTTCTCCACGTTCGCGTCTGGCCC
GGCGGGAAGGGAGAAGACACTGCGTCAAGCAGGTGCCCCGAATAACCGCTGGCGGGAGGAGCTCTCCCACATGGAGCGAC
TTCCCCCGGTGCTTCCCGGCCGCCCCTATGACCTGGCGGCGGCGACCGTGGCCACAGACCTGGAGAGCGGCGGAGCCGGT
GCGGCTTGCGGCGGTAGCAACCTGGCGCCCCTACCTCGGAGAGAGACCGAGGAGTTCAGCGATCTCCTGGACCTAGACTT
TCATCCTCTCCAATTCGCTGACCCATCCTCCGGAGTCAGTGGCCGCCACCGTGTCCTCGTCAGCGTCAGCCTCCTCCTCC
TCCTCGTCGTCCCCGTCGAGCAGCGGCCCTGCCAGCGCGCCCCCCACCTGCAGCTTCACCGATCCCATCCGGGCCGGGAA
ACACCCGGGCGTGGCGCCGGGCGGCACGGGCGGAGGCCTCTTGATGGCAGGGAGTCCGCTCCCCCTCCGACGGCTCCCTT
CAACCTGGCGGACATCAACGACGTGAGCCCCTCGGGCGGCTTCGTGGCCGAGCTCCTGCGGCCAGAATTGGACCCGGTGT
ACATTCCGCCGCAGCAGCCGCAGCCGGCAGGTGCCGGGCTGATGGGCAAGTTCGTGCTGAAGGCGTCGCTGAGCGCCCCT
GGCAGCGAGTAGGGCAGCCTGTCGGTCATCAGCGTCAGCAAAGGCAGCCCTGACGGCAGCCACCCGGTGGTGGTGGCGCC
CTACAACGGCGGGCCGCCGCGCACGTGTCCCAAGATCAAGCGGGAGGCGGTCTCCTGGTGCTCCCACTTGGGCGTTGGAA
CCCCTCTCAGCAATGGCCACCGGCCGGCTGCACACGACTTCCCCCTGGGGCGGCAGCTCCCCAGCAGGACTACCCCGACC
CTGGGTCTGGAGGAAGTGCTGAGCAGCCGGGACTGTCACCCTGCCCTGCCGCTTCCCCGCCCTCTACCCCCCTCCGGCTT
CCATCCCCACCCGGGGCCCAAGTACCCATCCTTCCTGCCCGACCAGATGCAGCCGCAAGTCCCGTCGCTCCATTACCAAG
AGCTCATGCCACCCGGTTCCTGCATGCCGGAGGAGCCCAAGCCAAAGAGGGGAAGACGATCGTGGCCCCGAAAAGGGCCG
CCACCCACACTTGTGATTACGCGGGCTGCGGCCAAGCCTACACAAAGAGTTCCCATCTCAAGGCACACCTGCGAACCCAC
ACAGGTGAGAAACCTTACCACTGTGACTGGGACGGCTGTGGATGGAAATTCGCCCGCTCGGATGAACTGACCAGGCACTA
CCGTAAACACACTGGGCACTGCCCATTCCAGTGCCAAAAATGCGACCGAGCATTTTCCAGGTCGGACCACCTCGCCTTAC
ACATGAAGAGGCATTTT
ORF - retro_pabe_3579 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
92.23 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | MRQPPGESDMAVSDALLPSFSTFASGPAGREKTLRQAGAPNNRWREELSHMKRLPPVLPGRPYDLAAATV |
| M.QPPGESDMAVSDALLPSFSTFASGPAGREKTLRQAGAPNNRWREELSHM.RLPPVLPGRPYDLAAATV |
Retrocopy | MGQPPGESDMAVSDALLPSFSTFASGPAGREKTLRQAGAPNNRWREELSHMERLPPVLPGRPYDLAAATV |
|
Parental | ATDLESGGAGAACGGSNLVPLPRRETEEFNDLLDLDF-ILSNSLTHPPESVAATVSSSASASSSSS--PS |
| ATDLESGGAGAACGGSNL.PLPRRETEEF.DLLDLDF.ILSNSLTHPPESVAATVSSSASASSSSS..PS |
Retrocopy | ATDLESGGAGAACGGSNLAPLPRRETEEFSDLLDLDF>ILSNSLTHPPESVAATVSSSASASSSSSSSPS |
|
Parental | SSGPASAPSTCSFTYPIRAGNDPGVAPGGTGGGLLY-GRESAPPPTAPFNLADINDVSPSGGFVAELLRP |
| SSGPASAP.TCSFT.PIRAG..PGVAPGGTGGGLL..GRESAPPPTAPFNLADINDVSPSGGFVAELLRP |
Retrocopy | SSGPASAPPTCSFTDPIRAGKHPGVAPGGTGGGLLM<GRESAPPPTAPFNLADINDVSPSGGFVAELLRP |
|
Parental | ELDPVYIPPQQPQPPGGGLMGKFVLKASLSAPGSEYGSPSVISVSKGSPDGSHPVVVAPYNGGPPRTCPK |
| ELDPVYIPPQQPQP.G.GLMGKFVLKASLSAPGSE.GS.SVISVSKGSPDGSHPVVVAPYNGGPPRTCPK |
Retrocopy | ELDPVYIPPQQPQPAGAGLMGKFVLKASLSAPGSE*GSLSVISVSKGSPDGSHPVVVAPYNGGPPRTCPK |
|
Parental | IKQEAVSSCTHLGAGPPLSNGHRPAAHDFPLGRQLPSRTTPTLGLEEVLSSRDCHPALPLPPGFHP---H |
| IK.EAVS.C.HLG.G.PLSNGHRPAAHDFPLGRQLPSRTTPTLGLEEVLSSRDCHPALPLP....P...H |
Retrocopy | IKREAVSWCSHLGVGTPLSNGHRPAAHDFPLGRQLPSRTTPTLGLEEVLSSRDCHPALPLPRPLPPSGFH |
|
Parental | P--GPNYPSFLPDQMQPQVPPLHYQELMPPGSCMPEEPKPKRGRRSWPR-KRTATHTCDYAGCGKTYTKS |
| P..GP.YPSFLPDQMQPQVP.LHYQELMPPGSCMPEEPKPKRGRRSWPR.KR.ATHTCDYAGCG..YTKS |
Retrocopy | PHPGPKYPSFLPDQMQPQVPSLHYQELMPPGSCMPEEPKPKRGRRSWPR<KRAATHTCDYAGCGQAYTKS |
|
Parental | SHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF |
| SHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH.PFQCQKCDRAFSRSDHLALHMKRHF |
Retrocopy | SHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHCPFQCQKCDRAFSRSDHLALHMKRHF |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain_prefrontal_cortex |
0 .00 RPM |
1 .38 RPM |
SRP007412_cerebellum |
0 .00 RPM |
0 .85 RPM |
SRP007412_heart |
0 .00 RPM |
3 .76 RPM |
SRP007412_kidney |
0 .00 RPM |
1 .96 RPM |
SRP007412_liver |
0 .00 RPM |
1 .53 RPM |
Pongo abelii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_pabe_3579 retrocopy.
Pongo abelii was not studied using FANTOM5 data.
retro_pabe_3579 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_pabe_3579 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
11 retrocopies.