>retro_pabe_2022
ATGAGGCAGCCACCTGGCGAGTCTGACCTGGCTGTCAGCGACGCGCTGCTCCCATCTTTCTCCACGTTCGCGTCTGGCCC
GGCGGGAAGGGAGAAGACACTGCGTCAAGCAGGTGCCCCGAATAACCGCTGGCGGGAGGAGCTCTCCCACATGAAGCGAC
TTCCCCCGGTGCTTCCCGGCCGCCCCTATGACCTGGCGGCGGCGACCGTGGCCACAGACCTGGAGAGCGGCGGAGCCGGT
GCGGCTTGCGGCGGTAGCAACCTGGCGCCCCTACCTCGGAGAGAGACCGAGGAGTTCAACGATCTCCTGGACCTGGACTT
TATCCTCTCCAATTCGCTGACCCATCCTCCGGAGTCAGTGGCCGCCACCGTGTCCTCGTCAGCGTCAGCCTCCTCCTCGT
CGTCCCCGTCGAGCAGCGGCCCTGCCAGCGCGCCCTCCACCTGCAGCTTCACCTATCCGATCCGGGCCGGGAACGACCCG
GGCGTGGCGCCGGGCGGCACGGGCGGAGGCCTCTTGATGGCAGGGAGTCCGCTCCCCCTCCGACGGCTCCCTTCAACCTG
GCGGACATCAACGACGTGAGCCCCTCGGGCGGCTTCGTGGCCGAGCTCCTGCGGCCAGAATTGGACCGGGTGTACATTCC
GCCGCAGCAGCCGCAGCCGCCAGGTGGCGGGCTGATGGGCAAGTTCGTGCTGAAGGCGTCGCTGAGCGCCCCTGGCAGCG
AGTACGGCAGCCCGTCGGTCATCAGCGTCGGCAAAGGCAGCCCTGACGGCAGCCACCCGGTGGTGGTGGCGCCCTGCAAC
GGCGGGCCGCCGCGCACGTGTCCCAAGATCAAGCAGGAGGCGGTCTCCTCGTGCACCCACTTGGGCGCTGGACCCCCTCT
CAGCAATGGCCACCGGCCGGCTGCACACGACCTCCCCCTGGGGCGGCAGCTCCCCAGCAGGACTACCCCGACCCTGGGTC
TTGAGGCAGTGCTGAGCAGCAGGGACTGTCACCCTGCCCTGCCGCTTCCCCCCGGCTTCCATCCCCACCCGGGGCCCAAT
TACCCATCCTTCCTGCCCGACCAGATGCAGCCGCTCCACTACCAAGAGCTCATGCCACCCGGTTCGTGCATGCCGGAGGA
GCCCAAGCCAAAGAGGGGAAGACGATCGTGGCCCCGGAAAAGGACCGCCACCCACACTTGTGATTACGCGGGCTGCGGCA
AAACCTACACAAAGAGTTCCCATCTCAAGGCACACCTGCGAACCCACACAGGTGAGAAACCTTACCACTGTGACTGGGAC
GGCTGTGGATGGAAATTCGCCCGCTCAGATGAACTGACCAGGCACTACCGTAAACACACTGGGCACCGCCCGTTCCAGTG
CCAAAAATGCGACCGAGCATTTTCCAGGTCGGACCACCTTGCCTTACACATGAAGAGGCATTTT
ORF - retro_pabe_2022 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
97.29 % |
Parental protein coverage: |
100. % |
Number of stop codons detected: |
0 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | MRQPPGESDMAVSDALLPSFSTFASGPAGREKTLRQAGAPNNRWREELSHMKRLPPVLPGRPYDLAAATV |
| MRQPPGESD.AVSDALLPSFSTFASGPAGREKTLRQAGAPNNRWREELSHMKRLPPVLPGRPYDLAAATV |
Retrocopy | MRQPPGESDLAVSDALLPSFSTFASGPAGREKTLRQAGAPNNRWREELSHMKRLPPVLPGRPYDLAAATV |
|
Parental | ATDLESGGAGAACGGSNLVPLPRRETEEFNDLLDLDFILSNSLTHPPESVAATVSSSASASSSSSPSSSG |
| ATDLESGGAGAACGGSNL.PLPRRETEEFNDLLDLDFILSNSLTHPPESVAATVSSSASASSSSSPSSSG |
Retrocopy | ATDLESGGAGAACGGSNLAPLPRRETEEFNDLLDLDFILSNSLTHPPESVAATVSSSASASSSSSPSSSG |
|
Parental | PASAPSTCSFTYPIRAGNDPGVAPGGTGGGLLY-GRESAPPPTAPFNLADINDVSPSGGFVAELLRPELD |
| PASAPSTCSFTYPIRAGNDPGVAPGGTGGGLL..GRESAPPPTAPFNLADINDVSPSGGFVAELLRPELD |
Retrocopy | PASAPSTCSFTYPIRAGNDPGVAPGGTGGGLLM<GRESAPPPTAPFNLADINDVSPSGGFVAELLRPELD |
|
Parental | PVYIPPQQPQPPGGGLMGKFVLKASLSAPGSEYGSPSVISVSKGSPDGSHPVVVAPYNGGPPRTCPKIKQ |
| .VYIPPQQPQPPGGGLMGKFVLKASLSAPGSEYGSPSVISV.KGSPDGSHPVVVAP.NGGPPRTCPKIKQ |
Retrocopy | RVYIPPQQPQPPGGGLMGKFVLKASLSAPGSEYGSPSVISVGKGSPDGSHPVVVAPCNGGPPRTCPKIKQ |
|
Parental | EAVSSCTHLGAGPPLSNGHRPAAHDFPLGRQLPSRTTPTLGLEEVLSSRDCHPALPLPPGFHPHPGPNYP |
| EAVSSCTHLGAGPPLSNGHRPAAHD.PLGRQLPSRTTPTLGLE.VLSSRDCHPALPLPPGFHPHPGPNYP |
Retrocopy | EAVSSCTHLGAGPPLSNGHRPAAHDLPLGRQLPSRTTPTLGLEAVLSSRDCHPALPLPPGFHPHPGPNYP |
|
Parental | SFLPDQMQPQVPPLHYQELMPPGSCMPEEPKPKRGRRSWPRKRTATHTCDYAGCGKTYTKSSHLKAHLRT |
| SFLPDQMQP....LHYQELMPPGSCMPEEPKPKRGRRSWPRKRTATHTCDYAGCGKTYTKSSHLKAHLRT |
Retrocopy | SFLPDQMQP----LHYQELMPPGSCMPEEPKPKRGRRSWPRKRTATHTCDYAGCGKTYTKSSHLKAHLRT |
|
Parental | HTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF |
| HTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF |
Retrocopy | HTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP007412_brain_prefrontal_cortex |
0 .00 RPM |
1 .38 RPM |
SRP007412_cerebellum |
0 .00 RPM |
0 .85 RPM |
SRP007412_heart |
0 .00 RPM |
3 .76 RPM |
SRP007412_kidney |
0 .00 RPM |
1 .96 RPM |
SRP007412_liver |
0 .00 RPM |
1 .53 RPM |
Pongo abelii was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_pabe_2022 retrocopy.
Pongo abelii was not studied using FANTOM5 data.
retro_pabe_2022 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_pabe_2022 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
5 parental genes, and
11 retrocopies.