>retro_rnor_2164
GTTGGACCCAGAATACATTCCGCCACAGGTGGCGGGCTGATGGGCAAGCTTGTGCTGAAGGCGTCTCTGAGCACCCCTGG
CAGCGAGTACACCAGCCCTTCGGTCATCAGTGTTAGCAAAGGAAGCCCAGAGGGCAGCCTCCCTGTGGTAGTGGCGCCCT
ACAGCGGTGGCCCGCCGCGCATGTGCCCCAAGATTAAGCAAGAGGCCGTCCTGTCCTGCACGGTCAGCCCGTCCCTAGAG
GCCCACTTAAGCGCTGGACCCCAGCTCAGCAATGGCCACAGGCCCAATACACACGACTTCCCCCTGGGACGTCAGCTTCC
TACCAGGACTACCCCTACACTGAGTCCTGAGGAACTGCTGAACAGCAGGGACTGTCACCCTGGCCTGCCTCTTCCCCCAG
GATTCCATCCCCATCCGGGGCCCAGCTACCCTCCTTTCCTGCCAGACCAGATGCAGTCGTAAGTCTCCTCTCTCCATTAT
CAAGAGCTCATGCCACCGGGATCCTGCCTGCCAGAGGAGCCCAAGCCAAAGAGGGGAAGAAGGTCTTGGCCCAGGAAAAG
AATAGCCACCCACACTTGTGACTATGCAGGCTGTGGCAAAACCTATACGAAGAGTTCTCATCTCAAGGCACACCTGCGAA
CTCACACAGGCGAGAAACCTTACCACCGTGACTGGGACGGCTGTGGGTGGAAATTCGCCCGCTCAGATGAACTGACCAGG
CACTACCGCAAACACACCGGGCACCGGCCCTTTCAGTGCTAGAAGTGCAACAGGGCCTTTTCCAGGTCGGACCACCTTGC
TGTACACATGAAGAGGCACTTT
ORF - retro_rnor_2164 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
92.7 % |
Parental protein coverage: |
56.85 % |
Number of stop codons detected: |
2 |
Number of frameshifts detected |
0 |
Retrocopy - Parental Gene Alignment:
Parental | IPPQQPQPPGGGLMGKFVLKASLSTPGSEYTSPSVISVSKGSPDGSHPVVVAPYSGGPPRMCPKIKQEAV |
| ..P......GGGLMGK.VLKASLSTPGSEYTSPSVISVSKGSP.GS.PVVVAPYSGGPPRMCPKIKQEAV |
Retrocopy | VGPRIHSATGGGLMGKLVLKASLSTPGSEYTSPSVISVSKGSPEGSLPVVVAPYSGGPPRMCPKIKQEAV |
|
Parental | PSCTVSRSLEAHLSAGPQLSNGHRPNTHDFPLGRQLPTRTTPTLSPEELLNSRDCHPGLPLPPGFHPHPG |
| .SCTVS.SLEAHLSAGPQLSNGHRPNTHDFPLGRQLPTRTTPTLSPEELLNSRDCHPGLPLPPGFHPHPG |
Retrocopy | LSCTVSPSLEAHLSAGPQLSNGHRPNTHDFPLGRQLPTRTTPTLSPEELLNSRDCHPGLPLPPGFHPHPG |
|
Parental | PSYPPFLPDQMQSQVPSLHYQELMPPGSCLPEEPKPKRGRRSWPRKRTATHTCDYAGCGKTYTKSSHLKA |
| PSYPPFLPDQMQS.V.SLHYQELMPPGSCLPEEPKPKRGRRSWPRKR.ATHTCDYAGCGKTYTKSSHLKA |
Retrocopy | PSYPPFLPDQMQS*VSSLHYQELMPPGSCLPEEPKPKRGRRSWPRKRIATHTCDYAGCGKTYTKSSHLKA |
|
Parental | HLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRHF |
| HLRTHTGEKPYH.DWDGCGWKFARSDELTRHYRKHTGHRPFQC.KC.RAFSRSDHLA.HMKRHF |
Retrocopy | HLRTHTGEKPYHRDWDGCGWKFARSDELTRHYRKHTGHRPFQC*KCNRAFSRSDHLAVHMKRHF |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)
Expression validation based on RNA-Seq data:
Library |
Retrocopy expression |
Parental gene expression |
SRP017611_brain |
0 .00 RPM |
5 .18 RPM |
SRP017611_kidney |
0 .00 RPM |
17 .10 RPM |
SRP017611_liver |
0 .00 RPM |
1 .82 RPM |
Rattus norvegicus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_rnor_2164 retrocopy.
Rattus norvegicus was not studied using FANTOM5 data.
retro_rnor_2164 was not experimentally validated.
Retrocopy orthology:
Retrocopy retro_rnor_2164 has 0 orthologous retrocopies within eutheria group .
Parental genes homology:
Parental genes homology involve
4 parental genes, and
10 retrocopies.