RetrogeneDB ID: | retro_itri_310 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393283.1:12588227..12588784(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSSTOG00000000642 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 91.49 % |
Parental protein coverage: | 89.42 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | LLQGDSNDDTEDVSLFDAEEETTNRPRKSKIRHPVASFF-HLFFRVSAIIVYLLCELLSSSFIACMVTII |
.L..DSNDDTEDVSL.D.EEETTNRPRK.KIRHPVASFF.HLFFRVSAIIVYLLCELLSSSFIACMVTII | |
Retrocopy | MLSQDSNDDTEDVSLLDTEEETTNRPRKPKIRHPVASFF>HLFFRVSAIIVYLLCELLSSSFIACMVTII |
Parental | LLLSCDFWAVKNVTGRLMV-GLRWWNHIDEDGKSHWVFESRKASPQENKTVSEAESRIFWLGLIACPILW |
LL.SCDFWA.KNVTGRLMV.GL.WWNHIDEDGKSH.VFESRKASPQENKTVSEAESRIFWLGLIACP.LW | |
Retrocopy | LL-SCDFWAIKNVTGRLMV>GLQWWNHIDEDGKSHRVFESRKASPQENKTVSEAESRIFWLGLIACPVLW |
Parental | VIFAFSALFSFRVKWLAVVIMGVVLQGANLYGYIRCKVGSRKNLTSMA |
V.FAFSALFSFRVKWLAV.IM.VVLQGANLYGYIRCKVGSRKNLTSMA | |
Retrocopy | VVFAFSALFSFRVKWLAVIIMHVVLQGANLYGYIRCKVGSRKNLTSMA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000005330 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000007609 | 2 retrocopies | |
Homo sapiens | ENSG00000171928 | 1 retrocopy | |
Homo sapiens | ENSG00000175106 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000003854 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000002825 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000019203 | 5 retrocopies | |
Nomascus leucogenys | ENSNLEG00000014658 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000000498 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000012225 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000007790 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000008796 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000050649 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000000642 | 6 retrocopies | |
Tarsius syrichta | ENSTSYG00000008082 | 2 retrocopies |