RetrogeneDB ID: | retro_itri_395 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393289.1:147265..148187(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSSTOG00000025866 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HIBADH | ||
Ensembl ID: | ENSSTOG00000004108 | ||
Aliases: | None | ||
Description: | 3-hydroxyisobutyrate dehydrogenase [Source:HGNC Symbol;Acc:4907] |
Percent Identity: | 95.78 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | SVCSRSMASKTPVGFIGLGNMGNPMAK-NLMKHGYPLIIYDVFPDACKEFQEAGEQVVSSPADVAEKADR |
.VCSRSMASKTPVGFIGLGNMGNPMAK.N.MKH.YPLII.DVFPDACKEFQEAGEQVVSSPADVAEKA.R | |
Retrocopy | AVCSRSMASKTPVGFIGLGNMGNPMAK>NFMKHAYPLIICDVFPDACKEFQEAGEQVVSSPADVAEKAHR |
Parental | IITMLPTSINAVEAYSGTNGILKKVKKGSLLIDSSTIDPSVSKELAKEVEKMGAVFMDAPVSGGVGAARS |
IITMLPTSINAVEAYSGTNGILKKVKKGSLLIDSSTIDPSVSKELAKEVEKMGAVFMDAPVSGGVGAA.S | |
Retrocopy | IITMLPTSINAVEAYSGTNGILKKVKKGSLLIDSSTIDPSVSKELAKEVEKMGAVFMDAPVSGGVGAAWS |
Parental | GNLTFMVGGVEEEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPK |
GNL.FMVGGVEEEFAAAQELLGCMGSNV..CGAVGTGQAAKIC.NM.LAISMIGTAEAMNLGIRLGLDPK | |
Retrocopy | GNLMFMVGGVEEEFAAAQELLGCMGSNVLFCGAVGTGQAAKICDNMQLAISMIGTAEAMNLGIRLGLDPK |
Parental | LLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSLAHQ |
LLAKILNMSSGRCWSSDTYNPVP.VMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSLAHQ | |
Retrocopy | LLAKILNMSSGRCWSSDTYNPVPAVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPILLGSLAHQ |
Parental | IYRMMCAKGYSKKDFSSVFQFLREEENF |
IYRMMCAKGYSKKDFSSVFQFLREEENF | |
Retrocopy | IYRMMCAKGYSKKDFSSVFQFLREEENF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003153 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000008640 | 2 retrocopies | |
Mus musculus | ENSMUSG00000029776 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000010349 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000016695 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000004108 | 1 retrocopy |
retro_itri_395 ,
|
Tarsius syrichta | ENSTSYG00000014191 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000012531 | 1 retrocopy |