RetrogeneDB ID: | retro_tsyr_1136 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_31874:3939..4542(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HIBADH | ||
Ensembl ID: | ENSTSYG00000014191 | ||
Aliases: | None | ||
Description: | 3-hydroxyisobutyrate dehydrogenase [Source:HGNC Symbol;Acc:4907] |
Percent Identity: | 71.36 % |
Parental protein coverage: | 66.23 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | CSRSVASKTPVGFIGLGNMGNPMAK-NLMKHG--YPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKA-D |
CSRS..SK..VG..GL.N.GNPMAK.NLMKHG..Y.LII.DVFPDACK..Q..GEQVVSSPAD.AEK..D | |
Retrocopy | CSRSKTSKILVGHTGLDNIGNPMAK>NLMKHGFLYLLIIHDVFPDACK*CQNVGEQVVSSPADAAEKV<D |
Parental | RIITMLPTSMNAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAAR |
R..TMLPTS.NAIEAYSGANGILKKVK.G.LL.D.STIDPA.SKE.AKE.E.M.AVF.D.PVSG.VGAA. | |
Retrocopy | RMMTMLPTSKNAIEAYSGANGILKKVKEGLLLVDASTIDPAISKEWAKETEEMRAVFTDTPVSGDVGAAG |
Parental | SGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRL |
SGNLT.M.GG.EDEFAAAQ...G..G..V.....V.TG.AAKIC.NMLL.ISM.GT.EAM.LGI.L | |
Retrocopy | SGNLTLMEGGIEDEFAAAQ---GLLGVWVPVWCIVETG*AAKICKNMLLTISMTGTTEAMSLGISL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003153 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000008640 | 2 retrocopies | |
Mus musculus | ENSMUSG00000029776 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000010349 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000016695 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000004108 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014191 | 1 retrocopy |
retro_tsyr_1136 ,
|
Vicugna pacos | ENSVPAG00000012531 | 1 retrocopy |