RetrogeneDB ID: | retro_vpac_571 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_4839:44341..44834(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HIBADH | ||
Ensembl ID: | ENSVPAG00000012531 | ||
Aliases: | None | ||
Description: | 3-hydroxyisobutyrate dehydrogenase [Source:HGNC Symbol;Acc:4907] |
Percent Identity: | 75.15 % |
Parental protein coverage: | 65.2 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | KVKKGSLLIDSSTIDPMVSKELAKEVEKMGAVFMDAPVSGGVGA-ARSGNLTFMVGGVEDEFAAAQELLG |
K.KK.SL.IDS..I.PMV.KELAKEVEKMGAVF..APVS.GVG..A.S.NL.FMVGGV.DEFAAAQELLG | |
Retrocopy | KAKKSSLSIDSRAINPMVLKELAKEVEKMGAVFLEAPVSDGVGS>AQSENLMFMVGGVRDEFAAAQELLG |
Parental | CMGSNVVYCGAVGTGQAAKIC-NNLLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNP |
..G..VV..GA.GTGQ.A..C...LLLAI.MIGTAEAMNLGIRLGLDPKLLAKILN.SS..CWSSD.YNP | |
Retrocopy | YKGCDVVCYGALGTGQTARLCYSSLLLAICMIGTAEAMNLGIRLGLDPKLLAKILNISSRQCWSSDIYNP |
Parental | VPGVMDGVPSANNYQGGFGTTLMAK |
VPGVMDGVPS..N.QG.F..TL.AK | |
Retrocopy | VPGVMDGVPSPKNCQGEFRITLTAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000003153 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000008640 | 2 retrocopies | |
Mus musculus | ENSMUSG00000029776 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000010349 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000016695 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000004108 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000014191 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000012531 | 1 retrocopy |
retro_vpac_571 ,
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