RetrogeneDB ID: | retro_itri_480 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393294.1:2542587..2543032(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF5 | ||
Ensembl ID: | ENSSTOG00000024478 | ||
Aliases: | None | ||
Description: | ring finger protein 5, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:10068] |
Percent Identity: | 76.97 % |
Parental protein coverage: | 83.89 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | CLETAREAVVSVCGHLYCWPCLHQWLETRPERQECPVCKAGISREKVVPLYGRGSQKPQDPRLKTPPRPQ |
CLETA.EAVVSVCGHLYCWP.L.Q.LET.PE.QECP.CKA.I.REKVV.LYGRGSQKPQDPRL.TPP.PQ | |
Retrocopy | CLETAQEAVVSVCGHLYCWPYLPQRLETQPEQQECPMCKAVIGREKVVLLYGRGSQKPQDPRLETPPHPQ |
Parental | GQRPAPESRGGFQPFGDTGGFHFSFGVGAFPFGFFT-TVFNAHEPFRRGAGVDLGQGHPASSWQDSLFLF |
GQRPAPE..G..QP.GDT.GFH..F..G...F...T.TVFNA.EPFRR.AGV.LGQGHPASSWQ.SLFLF | |
Retrocopy | GQRPAPENSGRLQPLGDTRGFH--FSLGVGAFSCDT>TVFNACEPFRRDAGVGLGQGHPASSWQNSLFLF |
Parental | LAIFFFFWLLSI |
LAI.FFFWLL.I | |
Retrocopy | LAI-FFFWLLCI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Oryctolagus cuniculus | ENSOCUG00000016417 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000031466 | 1 retrocopy | |
Oreochromis niloticus | ENSONIG00000013523 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000004366 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000018010 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000024478 | 1 retrocopy |
retro_itri_480 ,
|
Tupaia belangeri | ENSTBEG00000016320 | 1 retrocopy |