RetrogeneDB ID: | retro_ogar_1951 | ||
Retrocopylocation | Organism: | Bushbaby (Otolemur garnettii) | |
Coordinates: | GL873576.1:7066597..7067104(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF5 | ||
Ensembl ID: | ENSOGAG00000031466 | ||
Aliases: | None | ||
Description: | ring finger protein 5, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:10068] |
Percent Identity: | 60.11 % |
Parental protein coverage: | 95.56 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | MAAAEEED-GGPEGP-NRERGGAGATFECN-ICLETAREAVVSV-CGHLYCWPCLHQWLETRPERQECPV |
MA.A..E..GG.EG..N...GGAGATF..N..CLE.A.EAVV.V.CGH..C.P.LHQWLET.P.RQ.CP. | |
Retrocopy | MAKAAVEE<GGSEGQ<NCKQGGAGATFTGN>LCLEAAPEAVVVVICGHTQCQPGLHQWLETWPLRQQCPM |
Parental | CKAGISREKVVPLYGRGSQKPQ-DPRLKTPPRPQGQRPAPESRGGFQPFGDTGGFHFSFGVGAFPFG-FF |
CKAGIS.EKVVP..GRGSQK...DPRLK.PP..QGQ.PAPESRG.FQP.GD.G...FSFG.GAFPF..F. | |
Retrocopy | CKAGISKEKVVPPFGRGSQKSR<DPRLKSPPLSQGQQPAPESRGRFQPLGDPGRSPFSFGDGAFPFA<FL |
Parental | TTVFNTHEPFRRGTGVDLGQGHPASSWQDSLFLFLAIF |
TT..NT...F..G.G......H...S...SL.L.L..F | |
Retrocopy | TTI-NTCASF--GPGFSFPLFHKCGSRWGSLSLQLGGF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Oryctolagus cuniculus | ENSOCUG00000016417 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000031466 | 1 retrocopy |
retro_ogar_1951 ,
|
Oreochromis niloticus | ENSONIG00000013523 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000004366 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000018010 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000024478 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016320 | 1 retrocopy |