RetrogeneDB ID: | retro_opri_667 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | scaffold_228:522682..522924(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF5 | ||
Ensembl ID: | ENSOPRG00000004366 | ||
Aliases: | None | ||
Description: | ring finger protein 5, E3 ubiquitin protein ligase [Source:HGNC Symbol;Acc:10068] |
Percent Identity: | 68.29 % |
Parental protein coverage: | 57.14 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 2 |
Parental | AAEEEDGGPE-GPNRERGGAGATFECNICLETAREAVVSVCGHLYXXXXXXXWLEARPERQQCLVCKA-G |
AA.E.DGGP..G.NRE...AGATF.CNI.LETA.EAVVS.CGHLY.......WLE.RPERQQC.VCKA.. | |
Retrocopy | AAAEKDGGPL>GSNREQDAAGATFRCNIRLETAWEAVVSACGHLYCWPCLHQWLETRPERQQCPVCKA>S |
Parental | SSESVVPLYGRG |
S.ES..PLYGRG | |
Retrocopy | SAESIIPLYGRG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Oryctolagus cuniculus | ENSOCUG00000016417 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000031466 | 1 retrocopy | |
Oreochromis niloticus | ENSONIG00000013523 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000004366 | 2 retrocopies |
retro_opri_166, retro_opri_667 ,
|
Pan troglodytes | ENSPTRG00000018010 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000024478 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016320 | 1 retrocopy |