RetrogeneDB ID:

retro_onil_48

Retrocopy
location
Organism:Tilapia (Oreochromis niloticus)
Coordinates:GL831259.1:1429294..1429687(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RNF5
Ensembl ID:ENSONIG00000013523
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_onil_48
CGGCAGCGGGATCGAGCCACCTTCGAGTGCAACATTTGCTTGGACACTGCCAGGGACGCCGTCATCAGTCTGTGCGGACA
CCTGTTCTGCTGGCCCTGTCTTCATCAGTGGTTGGAGACACGGCCCAGCCGACAGCAGTGTCCCGTGTGCAAGGCAGGCA
TCAGCAGAGAGAAAGTAATCCCGCTATACGGCAGAGGGAGCTCCAGCCAGGAGGACCCCAGGTTGAAAACTCCACCCCGG
CCTCAGGGGCAGAGAACAGAACCCGAGAGCAGAGGCGGGATGTTCCGCGGTTTCGGGGACACCGGCTTCCACATGTCTTT
CGGCATCGGCGTGTTCCCCTTCGGCTTCTTCACAACAGTCTTCAATGCCAACGACCCCTTCCACAGAGCAGAT

ORF - retro_onil_48 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 98.47 %
Parental protein coverage: 65.5 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalRERDRATFECNICLDTARDAVISLCGHLFCWPCLHQWLETRPSRQQCPVCKAGISREKVIPLYGRGSSSQ
R.RDRATFECNICLDTARDAVISLCGHLFCWPCLHQWLETRPSRQQCPVCKAGISREKVIPLYGRGSSSQ
RetrocopyRQRDRATFECNICLDTARDAVISLCGHLFCWPCLHQWLETRPSRQQCPVCKAGISREKVIPLYGRGSSSQ
ParentalEDPRLKTPPRPQGQRTEPESRGGMFRGFGDTGFHMSFGIGAFPFGFFTTVFNANDPFHRAD
EDPRLKTPPRPQGQRTEPESRGGMFRGFGDTGFHMSFGIG.FPFGFFTTVFNANDPFHRAD
RetrocopyEDPRLKTPPRPQGQRTEPESRGGMFRGFGDTGFHMSFGIGVFPFGFFTTVFNANDPFHRAD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Oreochromis niloticus was not studied using RNA-Seq expression data.
Oreochromis niloticus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_onil_48 retrocopy.
Oreochromis niloticus was not studied using FANTOM5 data.
retro_onil_48 was not experimentally validated.

Retrocopy orthology:
Oreochromis niloticus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 7 parental genes, and 8 retrocopies.

Species Parental gene accession Retrocopies number
Oryctolagus cuniculus ENSOCUG000000164171 retrocopy
Otolemur garnettii ENSOGAG000000314661 retrocopy
Oreochromis niloticus ENSONIG00000013523 1 retrocopy
retro_onil_48 ,
Ochotona princeps ENSOPRG000000043662 retrocopies
Pan troglodytes ENSPTRG000000180101 retrocopy
Ictidomys tridecemlineatus ENSSTOG000000244781 retrocopy
Tupaia belangeri ENSTBEG000000163201 retrocopy



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