RetrogeneDB ID: | retro_onil_48 | ||
Retrocopylocation | Organism: | Tilapia (Oreochromis niloticus) | |
Coordinates: | GL831259.1:1429294..1429687(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RNF5 | ||
Ensembl ID: | ENSONIG00000013523 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 98.47 % |
Parental protein coverage: | 65.5 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RERDRATFECNICLDTARDAVISLCGHLFCWPCLHQWLETRPSRQQCPVCKAGISREKVIPLYGRGSSSQ |
R.RDRATFECNICLDTARDAVISLCGHLFCWPCLHQWLETRPSRQQCPVCKAGISREKVIPLYGRGSSSQ | |
Retrocopy | RQRDRATFECNICLDTARDAVISLCGHLFCWPCLHQWLETRPSRQQCPVCKAGISREKVIPLYGRGSSSQ |
Parental | EDPRLKTPPRPQGQRTEPESRGGMFRGFGDTGFHMSFGIGAFPFGFFTTVFNANDPFHRAD |
EDPRLKTPPRPQGQRTEPESRGGMFRGFGDTGFHMSFGIG.FPFGFFTTVFNANDPFHRAD | |
Retrocopy | EDPRLKTPPRPQGQRTEPESRGGMFRGFGDTGFHMSFGIGVFPFGFFTTVFNANDPFHRAD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Oryctolagus cuniculus | ENSOCUG00000016417 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000031466 | 1 retrocopy | |
Oreochromis niloticus | ENSONIG00000013523 | 1 retrocopy |
retro_onil_48 ,
|
Ochotona princeps | ENSOPRG00000004366 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000018010 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000024478 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000016320 | 1 retrocopy |