RetrogeneDB ID: | retro_itri_506 | ||
Retrocopylocation | Organism: | Squirrel (Ictidomys tridecemlineatus) | |
Coordinates: | JH393297.1:7047591..7047996(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL10 | ||
Ensembl ID: | ENSSTOG00000011857 | ||
Aliases: | None | ||
Description: | ribosomal protein L10 [Source:HGNC Symbol;Acc:10298] |
Percent Identity: | 84.17 % |
Parental protein coverage: | 62.5 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | CGKDGFHIRVRLHPFHVIRINKM-LSCAGADR-LQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEH |
C.KDGF.IRV.LHP.HVI.INK..LSCAGAD..LQTGM.GAFGKPQGTV.RVHIGQVIMSI.TKLQNKEH | |
Retrocopy | CAKDGFYIRVQLHPLHVIHINKI<LSCAGADG<LQTGMQGAFGKPQGTVVRVHIGQVIMSICTKLQNKEH |
Parental | VIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDM-VA-EKRLIPDGCGVKYIPNRGPLDKWRALHS |
VIEAL.RAKFKFPG..KIHISKKWGFTKFNAD.FE.M.VA.EKRLIPDG.GVKYI.NRGPLDKW.ALHS | |
Retrocopy | VIEALCRAKFKFPGLWKIHISKKWGFTKFNADKFENM<VALEKRLIPDGGGVKYILNRGPLDKWQALHS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000007454 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000002355 | 1 retrocopy | |
Equus caballus | ENSECAG00000017154 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000013163 | 3 retrocopies | |
Microcebus murinus | ENSMICG00000004658 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000008731 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000009320 | 3 retrocopies | |
Mus musculus | ENSMUSG00000008682 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000000099 | 3 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000011857 | 2 retrocopies |
retro_itri_174, retro_itri_506 ,
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