RetrogeneDB ID:

retro_ogar_2995

Retrocopy
location
Organism:Bushbaby (Otolemur garnettii)
Coordinates:GL873693.1:2226651..2227012(-)
Located in intron of:ENSOGAG00000004523
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL10
Ensembl ID:ENSOGAG00000000099
Aliases:None
Description:ribosomal protein L10 [Source:HGNC Symbol;Acc:10298]


Retrocopy-Parental alignment summary:






>retro_ogar_2995
CCATTCCAATACATGTTCATGTGTTAGACCTTGGGCTGTCCCCAATCTAGGCTCCAGAAAGGTATCCATGGTGCCTTTGG
AAAGCCCCAGGGCACTGTGGCCAGGGTTCACATTGGCCAAGTCATCATGTCCATCTGCACTAAACTACAGAACAAGGAGT
ATGTGACTAAGGCCCTTCGCAGGGCCAGTTCAAGTTCCCTGTCTGTCAGAAGATTCACATCTCCAAAAAATAGGGTTTAC
CAAGTTTAACTCAGACAAATTTAAAGACATGGCAGCTGAGAAGTGGCTCATCCCAGATGGCTGTGGGGTCAAATACATTC
CCAGTCATGGCCCCGTGGACAAGTGGTGGGCCCTGCCCTCA

ORF - retro_ogar_2995 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 70.97 %
Parental protein coverage: 57.01 %
Number of stop codons detected: 1
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalPFHVIRINKMLSCAGADRPQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRA-KFKFPG
PF........L.C....R.Q.G..GAFGKPQGTVARVHIGQVIMSI.TKLQNKE.V..ALRRA..FKFP.
RetrocopyPFQYMFMC*TLGCPQS-RLQKGIHGAFGKPQGTVARVHIGQVIMSICTKLQNKEYVTKALRRA<QFKFPV
ParentalRQKIHISKK-WGFTKFNSDEFEDMVAEKRLIPDGCGVKYIPNRGPLDKWRALHS
.QKIHISKK..GFTKFNSD.F.DM.AEK.LIPDGCGVKYIP..GP.DKW.AL.S
RetrocopyCQKIHISKK<IGFTKFNSDKFKDMAAEKWLIPDGCGVKYIPSHGPVDKWWALPS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Otolemur garnettii was not studied using RNA-Seq expression data.
Otolemur garnettii was not studied using ChIP-Seq data.
Otolemur garnettii was not studied using EST data.
Otolemur garnettii was not studied using FANTOM5 data.
retro_ogar_2995 was not experimentally validated.

Retrocopy orthology:
Otolemur garnettii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 10 parental genes, and 20 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000074542 retrocopies
Cavia porcellus ENSCPOG000000023551 retrocopy
Equus caballus ENSECAG000000171541 retrocopy
Macropus eugenii ENSMEUG000000131633 retrocopies
Microcebus murinus ENSMICG000000046582 retrocopies
Monodelphis domestica ENSMODG000000087312 retrocopies
Mustela putorius furoENSMPUG000000093203 retrocopies
Mus musculus ENSMUSG000000086821 retrocopy
Otolemur garnettii ENSOGAG00000000099 3 retrocopies
retro_ogar_293, retro_ogar_2995 , retro_ogar_3284,
Ictidomys tridecemlineatus ENSSTOG000000118572 retrocopies



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