RetrogeneDB ID:

retro_mmur_4

Retrocopy
location
Organism:Mouse Lemur (Microcebus murinus)
Coordinates:scaffold_9931:50690..51335(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSMICG00000014368
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL10
Ensembl ID:ENSMICG00000004658
Aliases:None
Description:ribosomal protein L10 [Source:HGNC Symbol;Acc:10298]


Retrocopy-Parental alignment summary:






>retro_mmur_4
ATGGGTCGCCGCCCGGCTCGCTGTTACCGGTATTGTAAGAACAAGCCGTATCCAAAGTCTCGTTTCTGCCGAGGTGTCCC
TGATGCCAAGATCCGCATCTTCGACTTGGGTAGGAAGAAGGCAAAAGTTGATGAATTCCCGCTCTGTGGCCACATGGTGT
CTGATGAATATGAGCAGCTCTCCTCCGAGGCCTTGGAGGCCGCCCGTATTTGTGCCAACAAGTACATGGTGAAAAGTTGT
GGCAAAGATGGCTTTCACATCCGAGTGCGGCTCCATCCCTTCCATGTCATCCGCATCAACAAGATGTTATCCTGTGCTGG
CGCTGACAGGCTCCAGACAGGTATGCGAGGTGCTTTCGGAAAACCGCAGGGTACCGTGGCCAGGGTCCACATTGGACAAG
TCATCATGTCCATACGCACCAAGCTTCAGAACAAGGAGCATGTGATTGAAGCCTTACGCAGGGCCAAGTTCAAGTTCCCT
GGACGTCAGAAGATCCATATCTCCAAGAAGTGGGGCTTTACCAAGTTTAATGCTGATGAATTTGAAGACAAGTTGGCTGA
GAAGCGCCTCATTCCTGATGGTTGTGGAGTCAAACATATCCCCAACCGTGGCCCCTTGAACAAGTGGCGAGCTCTGCACT
CATGA

ORF - retro_mmur_4 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 98.13 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARI
MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARI
RetrocopyMGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARI
ParentalCANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRT
CANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRT
RetrocopyCANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRT
ParentalKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPLDKWR
KLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFED..AEKRLIPDGCGVK.IPNRGPL.KWR
RetrocopyKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDKLAEKRLIPDGCGVKHIPNRGPLNKWR
ParentalALHS
ALHS
RetrocopyALHS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Microcebus murinus was not studied using RNA-Seq expression data.
Microcebus murinus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_mmur_4 retrocopy.
Microcebus murinus was not studied using FANTOM5 data.
retro_mmur_4 was not experimentally validated.

Retrocopy orthology:
Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 10 parental genes, and 20 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000074542 retrocopies
Cavia porcellus ENSCPOG000000023551 retrocopy
Equus caballus ENSECAG000000171541 retrocopy
Macropus eugenii ENSMEUG000000131633 retrocopies
Microcebus murinus ENSMICG00000004658 2 retrocopies
retro_mmur_1077, retro_mmur_4 ,
Monodelphis domestica ENSMODG000000087312 retrocopies
Mustela putorius furoENSMPUG000000093203 retrocopies
Mus musculus ENSMUSG000000086821 retrocopy
Otolemur garnettii ENSOGAG000000000993 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000118572 retrocopies



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