RetrogeneDB ID: retro_mmur_4

Retrocopy location

• Organism: Mouse Lemur (Microcebus murinus)
• Coordinates: scaffold_9931:50690..51335(-)
• Located in intron of: None

Retrocopy information

• Ensembl ID: ENSMICG00000014368
• Aliases: None
• Status: KNOWN_PROTEIN_CODING

Parental gene information

• Parental gene symbol: RPL10
• Ensembl ID: ENSMICG00000004658
• Aliases: None
• Description: ribosomal protein L10 [Source:HGNC Symbol;Acc:10298]

Sequence

>retro_mmur_4
ATGGGTCGCCGCCCGGCTCGCTGTTACCGGTATTGTAAGAACAAGCCGTATCCAAAGTCTCGTTTCTGCCGAGGTGTCCC
TGATGCCAAGATCCGCATCTTCGACTTGGGTAGGAAGAAGGCAAAAGTTGATGAATTCCCGCTCTGTGGCCACATGGTGT
CTGATGAATATGAGCAGCTCTCCTCCGAGGCCTTGGAGGCCGCCCGTATTTGTGCCAACAAGTACATGGTGAAAAGTTGT
GGCAAAGATGGCTTTCACATCCGAGTGCGGCTCCATCCCTTCCATGTCATCCGCATCAACAAGATGTTATCCTGTGCTGG
CGCTGACAGGCTCCAGACAGGTATGCGAGGTGCTTTCGGAAAACCGCAGGGTACCGTGGCCAGGGTCCACATTGGACAAG
TCATCATGTCCATACGCACCAAGCTTCAGAACAAGGAGCATGTGATTGAAGCCTTACGCAGGGCCAAGTTCAAGTTCCCT
GGACGTCAGAAGATCCATATCTCCAAGAAGTGGGGCTTTACCAAGTTTAATGCTGATGAATTTGAAGACAAGTTGGCTGA
GAAGCGCCTCATTCCTGATGGTTGTGGAGTCAAACATATCCCCAACCGTGGCCCCTTGAACAAGTGGCGAGCTCTGCACT
CATGA

Alignment

ORF - retro_mmur_4 Open Reading Frame is conserved.

Retrocopy - Parental Gene Alignment summary:

• Percent Identity: 98.13 %
• Parental protein coverage: 100. %
• Number of stop codons detected: 0
• Number of frameshifts detected: 0

Retrocopy - Parental Gene Alignment:

Parental  MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARI
          MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARI
Retrocopy MGRRPARCYRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARI

Parental  CANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRT
          CANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRT
Retrocopy CANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRT

Parental  KLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPLDKWR
          KLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFED..AEKRLIPDGCGVK.IPNRGPL.KWR
Retrocopy KLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDKLAEKRLIPDGCGVKHIPNRGPLNKWR

Parental  ALHS
          ALHS
Retrocopy ALHS

Legend:

• *: Stop codon
• >: Forward frameshift by one nucleotide
• <: Reverse frameshift by one nucleotide

Expression

RNA-Seq

Microcebus murinus was not studied using RNA-Seq expression data.

ChIP-Seq

Microcebus murinus was not studied using ChIP-Seq data.

EST

No EST(s) were mapped for retro_mmur_4 retrocopy.

TSS

Microcebus murinus was not studied using FANTOM5 data.

Lab

retro_mmur_4 was not experimentally validated.

Homology

Retrocopy orthology:

Microcebus murinus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

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Parental genes homology:

Parental genes homology involve 10 parental genes, and 20 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000007454	2 retrocopies	retro_btau_140, retro_btau_99,
Cavia porcellus	ENSCPOG00000002355	1 retrocopy	retro_cpor_64,
Equus caballus	ENSECAG00000017154	1 retrocopy	retro_ecab_113,
Macropus eugenii	ENSMEUG00000013163	3 retrocopies	retro_meug_1839, retro_meug_5, retro_meug_547,
Microcebus murinus	ENSMICG00000004658	2 retrocopies	retro_mmur_1077, retro_mmur_4 ,
Monodelphis domestica	ENSMODG00000008731	2 retrocopies	retro_mdom_177, retro_mdom_829,
Mustela putorius furo	ENSMPUG00000009320	3 retrocopies	retro_mputfur_1405, retro_mputfur_54, retro_mputfur_84,
Mus musculus	ENSMUSG00000008682	1 retrocopy	retro_mmus_71,
Otolemur garnettii	ENSOGAG00000000099	3 retrocopies	retro_ogar_293, retro_ogar_2995, retro_ogar_3284,
Ictidomys tridecemlineatus	ENSSTOG00000011857	2 retrocopies	retro_itri_174, retro_itri_506,