RetrogeneDB ID: | retro_lafr_1027 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_6:33463062..33463445(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LRRC57 | ||
Ensembl ID: | ENSLAFG00000005465 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 83.72 % |
Parental protein coverage: | 51.61 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | KTLSLSGNRLRTLPPQLCSLRHLDVMDLSKNQIRSIPDTVGDLQVIELNLNQNQISQISVKISCCPRLKV |
K.L.LSGN.L..LPPQLCSLRHLDVMDL.KNQIRS.PD.V..LQV.ELNLNQNQISQISVKISCCP.LKV | |
Retrocopy | KNLNLSGNQL*ALPPQLCSLRHLDVMDLAKNQIRSMPDIVEELQVTELNLNQNQISQISVKISCCPCLKV |
Parental | LRLE-ENCLELSMLPQSILSDSQICLLAVEGNLFEIKKLRELEGYDKYMERFTATKKKF |
..LE.ENCLELS.LPQ.ILSDSQ.CLLAVEGNLFEIKKL.ELEGYDK.MERF.ATKKKF | |
Retrocopy | RHLE<ENCLELSILPQGILSDSQACLLAVEGNLFEIKKLLELEGYDKHMERFMATKKKF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006482 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000002991 | 1 retrocopy | |
Homo sapiens | ENSG00000180979 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009597 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000005465 | 2 retrocopies |
retro_lafr_1027 , retro_lafr_767,
|
Macaca mulatta | ENSMMUG00000001544 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004485 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007751 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006976 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000009143 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000048310 | 1 retrocopy |