RetrogeneDB ID: | retro_rnor_796 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 11:41983554..41984028(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Lrrc57 | ||
Ensembl ID: | ENSRNOG00000009143 | ||
Aliases: | None | ||
Description: | leucine-rich repeat-containing protein 57 [Source:RefSeq peptide;Acc:NP_001012354] |
Percent Identity: | 80.62 % |
Parental protein coverage: | 97.56 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | MGNSALRAHVETAQKTGVFQLKDRGLTEFPSELQKLTSNLRTIDLSNNKIDSLPPLIIGKFTLLKSLSLN |
MGNSA...H.ETAQKTGV.QLKD..LTEFP.ELQKL.SNLRTI.LSN.KIDSLPPLIIGKFTLLKSLSLN | |
Retrocopy | MGNSAFHSHMETAQKTGVCQLKDHDLTEFPLELQKLMSNLRTINLSN-KIDSLPPLIIGKFTLLKSLSLN |
Parental | NNKLTVLPDELCNLKKLETLSLNNNHLRELPSSFGQLSALKTLSLSGNQLGALPPQLCSLRHLDVVDLSK |
..KLTVLP.EL.NLKKLETLSLNN..LRELPS..GQL.ALKTLS.SGN.LGALPPQLCS..HL...DLSK | |
Retrocopy | L-KLTVLPAELGNLKKLETLSLNNDPLRELPSTSGQLLALKTLSISGN*LGALPPQLCSM*HLVIADLSK |
Parental | NQIRSIPDTVGELQAIELNL |
NQI.SI.DTVGELQA.EL.L | |
Retrocopy | NQIQSILDTVGELQAFELDL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 17 .40 RPM |
SRP017611_kidney | 0 .00 RPM | 10 .12 RPM |
SRP017611_liver | 0 .00 RPM | 3 .43 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006482 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000002991 | 1 retrocopy | |
Homo sapiens | ENSG00000180979 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009597 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000005465 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000001544 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004485 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007751 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006976 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000009143 | 1 retrocopy |
retro_rnor_796 ,
|
Rattus norvegicus | ENSRNOG00000048310 | 1 retrocopy |