RetrogeneDB ID: | retro_hsap_2163 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 2:141655991..141656660(+) | ||
Located in intron of: | ENSG00000168702 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000238065 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LRRC57 | ||
Ensembl ID: | ENSG00000180979 | ||
Aliases: | None | ||
Description: | leucine rich repeat containing 57 [Source:HGNC Symbol;Acc:26719] |
Percent Identity: | 67.98 % |
Parental protein coverage: | 93.72 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | MGNSALRAHVETAQKTGVFQLKDRGLTEFPADLQKLTSNLRTIDLSNNKIESLPPLLIGKFTLLKSLSLN |
.GN.AL...VE.A..TGV.Q.KDRGLT.F...L..L.SN.RTIDLSNNK...LP.LLI.KFTLLK.L.LN | |
Retrocopy | IGNGALGTQVEWAH*TGVSQFKDRGLTKFSLEL*TLMSNPRTIDLSNNKMDNLPLLLIQKFTLLKNLPLN |
Parental | N-NKLTVLPDEICNLKK-LETLSLNNNHLRELPSTFGQLSALKTLSLSGNQLGALPP-QLCSLRHL-DVM |
N..KL..L....CN.KK.LE.L.LN..HLRELPSTFGQLS.LKTLSLSGNQLGAL.P.QLCSL.H..DV. | |
Retrocopy | N<HKLVCLM-RLCNPKKILEMLRLNGSHLRELPSTFGQLSTLKTLSLSGNQLGALSP<QLCSLGHR<DVV |
Parental | DLSKNQIRSIPDSVGELQVIELNLNQNQISQISVKISCCPRLKILRLEENCLELSMLPQSILSDSQICLL |
DLSKNQI.SIPD.VGELQVI.L.LN...ISQ.S.KIS.CP.LKIL.LEENCLELSML.QSI.SD.QIC.L | |
Retrocopy | DLSKNQI*SIPDIVGELQVIKLILNWKKISQVSIKISGCPCLKILHLEENCLELSMLSQSICSDCQICPL |
Parental | AVEGNLFEIKKLRELEGY |
..EGNLF.I......E.. | |
Retrocopy | DMEGNLFKINFNKYMERF |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 14 .47 RPM |
bodymap2_adrenal | 0 .00 RPM | 10 .42 RPM |
bodymap2_brain | 0 .00 RPM | 14 .23 RPM |
bodymap2_breast | 0 .00 RPM | 13 .31 RPM |
bodymap2_colon | 0 .00 RPM | 10 .65 RPM |
bodymap2_heart | 0 .00 RPM | 8 .57 RPM |
bodymap2_kidney | 0 .00 RPM | 11 .79 RPM |
bodymap2_liver | 0 .00 RPM | 4 .25 RPM |
bodymap2_lung | 0 .00 RPM | 10 .88 RPM |
bodymap2_lymph_node | 0 .00 RPM | 10 .76 RPM |
bodymap2_ovary | 0 .00 RPM | 15 .88 RPM |
bodymap2_prostate | 0 .00 RPM | 12 .04 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 6 .17 RPM |
bodymap2_testis | 0 .00 RPM | 11 .69 RPM |
bodymap2_thyroid | 0 .08 RPM | 16 .67 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 14 .33 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_1650 |
Gorilla gorilla | retro_ggor_1718 |
Callithrix jacchus | retro_cjac_2819 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006482 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000002991 | 1 retrocopy | |
Homo sapiens | ENSG00000148484 | 1 retrocopy | |
Homo sapiens | ENSG00000180979 | 1 retrocopy |
retro_hsap_2163 ,
|
Gorilla gorilla | ENSGGOG00000009597 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000005465 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000001544 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004485 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007751 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006976 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000009143 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000048310 | 1 retrocopy |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .03 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .00 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |