RetrogeneDB ID: | retro_rnor_1732 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 20:30419629..30419935(+) | ||
Located in intron of: | ENSRNOG00000046791 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Lrrc57 | ||
Ensembl ID: | ENSRNOG00000048310 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.22 % |
Parental protein coverage: | 61.82 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGNSALRAHVETAQKTGVFQLKDRGLTEFPSELQKLTSNLRTIDLSNNKIDSLPPLIIGKFTLLKSLSLN |
.GNSALRA..ETAQKTGV.Q.KD.GLT.FPSELQKLTSN.RTIDLSNNKIDSLPPLIIGKF.LLKSLSLN | |
Retrocopy | IGNSALRAYMETAQKTGVCQPKDLGLTDFPSELQKLTSNVRTIDLSNNKIDSLPPLIIGKFPLLKSLSLN |
Parental | NNKLTVLPDELCNLKKLETLSLNNNHLRELPS |
NNKLTVLPDELCNLKKLETLS.NNNHLREL.S | |
Retrocopy | NNKLTVLPDELCNLKKLETLSFNNNHLRELRS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .07 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .14 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006482 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000002991 | 1 retrocopy | |
Homo sapiens | ENSG00000180979 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000009597 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000005465 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000001544 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000004485 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000007751 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006976 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000009143 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000048310 | 1 retrocopy |
retro_rnor_1732 ,
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