RetrogeneDB ID: | retro_lafr_197 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_1:4362332..4362888(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHB | ||
Ensembl ID: | ENSLAFG00000000972 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 54.74 % |
Parental protein coverage: | 55.86 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | ITVVGVGQVGMACAVSILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADK-DYSVTANSKV |
.T...V...GMA.A..ILGKS.A.ELAL..VLE.KL.G..M..Q.GS.FL.TP.IVA.K.DYS..ANSK. | |
Retrocopy | MTSAAVCRLGMAWAIIILGKSFASELALAIVLEVKLQGDIMNPQNGSFFL*TPQIVAEK<DYSAKANSKI |
Parental | VVVTAGVRQQEGESRLNLVQR-NVNVFKFIIPQIVKYSPDCIIIVVSNPVDILTYVT-WKLSGLPKHRVI |
.VV..G....E..S.LNL....N...FKF.I..I..YSPDCI.I.V.N.VD.L.Y....KL...PK..V. | |
Retrocopy | MVVITGLC*EERKSYLNLPSK<NIITFKFTIFKIA*YSPDCIKITVFNLVDNLIYIL>LKLCEQPKLFVT |
Parental | GSGCNLDSARFRYLMAEKLGIHPSS-CHGWILGEHGDSSVAVWSGVNVAG |
.SGCNLDSA......AE.LGIHPS....GW.....GDSSVA.WS.VNVAG | |
Retrocopy | RSGCNLDSAGLGHFLAENLGIHPSC<LRGWLWRDYGDSSVAMWSKVNVAG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |