RetrogeneDB ID: | retro_cpor_762 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_27:4175848..4176483(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCPOG00000021820 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | LDHB | ||
Ensembl ID: | ENSCPOG00000007138 | ||
Aliases: | None | ||
Description: | lactate dehydrogenase B [Source:HGNC Symbol;Acc:6541] |
Percent Identity: | 73.15 % |
Parental protein coverage: | 64.37 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | EMMDLQHGSLFLQTSKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPD |
.MMD.Q.G..FLQTSKIVADK.YS..ANSKIVVVT....QQEGES.L...QRNVNVFKFIIP.I...SPD | |
Retrocopy | QMMDWQNGIVFLQTSKIVADKYYS--ANSKIVVVTTRICQQEGESWLSVMQRNVNVFKFIIPHIIRCSPD |
Parental | CTIIVVSNPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCH-GWILGEHGDSSVA |
CTIIV.S.P.DILTY..WKL.GLPKH..IGS..NLDSARF.YL..EKLGIHPS.C..GWI.GEHG.SSVA | |
Retrocopy | CTIIVISIPMDILTYAAWKLGGLPKHCLIGSRFNLDSARFCYLTSEKLGIHPSGCQ<GWIVGEHGNSSVA |
Parental | VWSGVNVAGVSLQELNPEMGTDNDSENWKEVHKTVVDSAYEVIKLKGYTNWAIGLSVADLIESILKNLSR |
VWSGVN.A.VS.QELN.EMGTDN.SENWKEV...V..SAY.VI.LK.YTNW.IGLSVA.L.ESIL.NLS. | |
Retrocopy | VWSGVNIADVSPQELNLEMGTDNESENWKEVCNMVAESAYVVIRLKDYTNWVIGLSVAKLAESIL-NLSK |
Parental | IHPVST |
.HPVS. | |
Retrocopy | VHPVSS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 308 .52 RPM |
SRP017611_kidney | 0 .00 RPM | 859 .17 RPM |
SRP017611_liver | 0 .00 RPM | 65 .77 RPM |
SRP040447_lung | 0 .00 RPM | 129 .11 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 553 .11 RPM |