RetrogeneDB ID: | retro_amel_814 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192659.1:999279..1000076(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSAMEG00000016175 | ||
Aliases: | None | ||
Description: | L-lactate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:D2I1F1] |
Percent Identity: | 72.69 % |
Parental protein coverage: | 79.64 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | GSLFLQTPKIVADKDYSVTANSKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS |
GS..LQ.PK.VADKDYSV..NSKIV...AGV.QQE.ESRLNL.QRNVNV.KFII.QI.KYSP.CIII.V. | |
Retrocopy | GSSLLQMPKTVADKDYSVSTNSKIVIENAGVCQQEEESRLNLGQRNVNVVKFIILQIIKYSPNCIIIIVP |
Parental | NPVD--ILTYVTWKLSALPKHRVIGSGCNLDSARFRYLMAEKLGVHPSSCHGWILGEHGDSSVAVWSGVN |
.P.D..ILTYVTWKL..L..H.V.GS.CNL.SARFR..MAEKLG.HPS.C..W..GE.G.SS.A.WSGVN | |
Retrocopy | SPADSHILTYVTWKLTGLSEHHVMGSECNLESARFRHFMAEKLGIHPSGC*VW--GEPGVSSEALWSGVN |
Parental | VAGVSLQELNPEMGTDNDSENWKEVHKM-VVESAYEVIKLKGYTNWAIG-LSVADLIESMLK-NLSRIHP |
VA.VSL.ELNPE.G.D.D.EN.KEVHKM.V..SA.E.IK...YT.WAIG..SVADLI.SMLK.NLSRIHP | |
Retrocopy | VASVSL*ELNPETGRDSDNEN*KEVHKM>VTGSASEAIKPERYTRWAIG<ISVADLIKSMLK<NLSRIHP |
Parental | VSTMVKGMYGIENEVFLSLPCILNARGLTSVINQKLKDDEVAQLKKSADTLWDIQKDLKDL |
.S.MVKGM.GIENEVFL.LPC.L.A.GLT.VI.QKLK.D.VAQLKKSADTLWDIQKDLK.L | |
Retrocopy | MSMMVKGMHGIENEVFLNLPCTLSAQGLTIVISQKLKGDQVAQLKKSADTLWDIQKDLKGL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |