RetrogeneDB ID: | retro_mmus_335 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 1:73512045..73512981(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ldhb | ||
Ensembl ID: | ENSMUSG00000030246 | ||
Aliases: | Ldhb, AI790582, H-Ldh, LDH-B, LDH-H, Ldh-2, Ldh2 | ||
Description: | lactate dehydrogenase B [Source:MGI Symbol;Acc:MGI:96763] |
Percent Identity: | 54.01 % |
Parental protein coverage: | 93.41 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 10 |
Parental | KEKLIASVAD-DEAAVPNNKITVVGVG-QVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLF |
.EKLIA.VA....A...N...T..G...QVGMA.A.SILG.SLA.ELALVD.LEDKLKG.M...QHG..F | |
Retrocopy | QEKLIAPVAEEEAATPHNKFTTGAGFQ>QVGMAYATSILGNSLANELALVDILEDKLKGGMLNQQHGGFF |
Parental | LQTPKIVA-DKDYSVTANSKIVVVTAGVRQQ-EGESRLNL-VQRN-VNVFKFIIPQIVKYSPDCTIIVVS |
....K.VA..KD.S..ANS..VV...G...Q.EG...LN..VQR....VFK...PQ...YS.DCTI..VS | |
Retrocopy | FHVHKTVA<NKDHSEIANSSVVVLVEGIHHQ<EGKGSLNQ<VQRK<ASVFKSSFPQTIQYSSDCTITMVS |
Parental | NPVDILTYVTWKLSGLPKHRVIGSGCNLDSARFRYLMAEKLGIHPSSCHGWILGEHGDSSVAVWSGVNVA |
N.VD..T..T.K.S.LPK..VI.S.CNL.SA.F.Y..AEK...HP..C.GWILGE.GDSSV.VWS.V... | |
Retrocopy | NSVDNPT*MT*KPSVLPKGHVIRSVCNLGSAKFWYVVAEKVALHPRGCQGWILGEYGDSSVTVWSRVKMV |
Parental | GVSLQELN-PEMGTDNDS-ENWKEVHKMVVDSAYEVIKLKGYT-NWAIGLSVADLIESMLKNLSRIHPVS |
G.SLQELN.P..G......E..KEV..MVV.SAYE.IKLK.Y......GL.VA....SML.N...I.P.S | |
Retrocopy | GISLQELN<PRNGNGQSE<ESRKEVYDMVVESAYEIIKLKRYA<HYVVGLYVAVFPKSMLENPPWIQPMS |
Parental | -TMVKGMYGIENEVFLSLP-CILNARGLTSVI-NQKLKDDEVAQ |
.T.VK.....EN.VFLSLP..IL....LTS.I.NQ.LK...VA. | |
Retrocopy | STAVKETHSTENKVFLSLP<RILGFQRLTSTI>NQTLKVVKVAE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 323 .16 RPM |
SRP007412_cerebellum | 0 .00 RPM | 420 .62 RPM |
SRP007412_heart | 0 .00 RPM | 1199 .98 RPM |
SRP007412_kidney | 0 .02 RPM | 997 .84 RPM |
SRP007412_liver | 0 .00 RPM | 2 .65 RPM |
SRP007412_testis | 0 .00 RPM | 63 .67 RPM |
Species | RetrogeneDB ID |
---|---|
Rattus norvegicus | retro_rnor_2697 |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016175 | 4 retrocopies | |
Canis familiaris | ENSCAFG00000012195 | 9 retrocopies | |
Cavia porcellus | ENSCPOG00000007138 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000013620 | 4 retrocopies | |
Felis catus | ENSFCAG00000012639 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000015758 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000000972 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000004825 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000017183 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000012155 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000002679 | 4 retrocopies | |
Monodelphis domestica | ENSMODG00000017786 | 1 retrocopy | |
Mus musculus | ENSMUSG00000030246 | 4 retrocopies | |
Mus musculus | ENSMUSG00000043262 | 1 retrocopy | |
Mus musculus | ENSMUSG00000063229 | 14 retrocopies | |
Otolemur garnettii | ENSOGAG00000004763 | 9 retrocopies | |
Pteropus vampyrus | ENSPVAG00000002462 | 3 retrocopies | |
Rattus norvegicus | ENSRNOG00000013000 | 3 retrocopies | |
Sus scrofa | ENSSSCG00000000576 | 1 retrocopy |