RetrogeneDB ID: | retro_sara_363 | ||
Retrocopylocation | Organism: | Shrew (Sorex araneus) | |
Coordinates: | scaffold_180050:1148..1709(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ZC3H15 | ||
Ensembl ID: | ENSSARG00000012071 | ||
Aliases: | None | ||
Description: | zinc finger CCCH-type containing 15 [Source:HGNC Symbol;Acc:29528] |
Percent Identity: | 96.79 % |
Parental protein coverage: | 50.95 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RSALGPNVTKITLESFLAWKKRKRQEKIDKLEQDMERRKADFKAGKALVISGREVFEFRPELVNDDDEEA |
RSALGPNVTKITLESF.AWKKRKRQEKIDKL.QDMERRKADFKAGKALVISGREVFEFRPELV.DDDEEA | |
Retrocopy | RSALGPNVTKITLESFRAWKKRKRQEKIDKLQQDMERRKADFKAGKALVISGREVFEFRPELVDDDDEEA |
Parental | DDTRYTQGAGGDEVEDSVNVNDIDLSLYIPRDVDETGITVASLERFSTYTSEKDENKLSEASGGRAENGE |
DD.RYTQGAGGDEVEDSVNVNDIDLSLYIP.DVDET.ITVASLERFSTYTSEKDENKLSEASGGRAENGE | |
Retrocopy | DDARYTQGAGGDEVEDSVNVNDIDLSLYIPKDVDETCITVASLERFSTYTSEKDENKLSEASGGRAENGE |
Parental | RSDLEEDNEGEGQENGAIDAVPVDENLFTGEDLDELEEELNTLDLEE |
RSDLEEDNEGEGQENGAIDAVPVDENLFTGEDLDELEEELNTLDLEE | |
Retrocopy | RSDLEEDNEGEGQENGAIDAVPVDENLFTGEDLDELEEELNTLDLEE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000021762 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000011958 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005931 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000012965 | 2 retrocopies | |
Dipodomys ordii | ENSDORG00000011664 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000001563 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000027565 | 5 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000011903 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000002182 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000015790 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000012717 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000005256 | 4 retrocopies | |
Sorex araneus | ENSSARG00000012071 | 1 retrocopy |
retro_sara_363 ,
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