RetrogeneDB - Retrocopy retro_meug

						
>retro_meug_1811
CTTTCGTGCACATACCATGAGAAAAGCTTGGTCAAGACAGCCTTCCAAAAAACTCTGAGTGACTTGAAGCTGAATTACTT

GGATATCTACCTTAATCATTGGCCTACAGGATTTAAGGCTGGAAAGGATTTGTTTCCATTGGATGATAAGGGCAATGTAA

TTCCCAGTAATACAAGCTTTTTGGATACATGGATGGCCATGGGAGAGTTGGTGGATGCAGGACTAGTAAAAGCCATTGGA

ATCTCCAGCTTTAACCATGACCAGATTGAGAAGCTCTTGACCAAACCGGGGCTGATGTAGGAGCCGGCAGTTAACCAGAT

CGAGTGCCACCCTTATCTCACCCAGGAGAAGCTGATAGAATATTGCCTGTCCAAGGGCATTATGGTGACTACCTACAGTC

CTCTTGGTTCTCCAGATCGGCCATGGGCCAAGCCAGAGGATCCTTCTCTCTTGAATGACCCCAGGATCCAAGCCATTGCT

GCAATGCACAAAAAAGCTACAGCGCAGGTTCTGATCAGATTCCATATCCAGAGAAAAGTGGTTGTGATCCCTAAGTCGAT

CACCCTGTCTTGAATTGCCGAGAACTTTCAG

ORF - retro_meug_1811 Open Reading Frame is not conserved.

Retrocopy - Parental Gene Alignment summary:

Percent Identity:	89.34 %
Parental protein coverage:	71.64 %
Number of stop codons detected:	2
Number of frameshifts detected	0

Retrocopy - Parental Gene Alignment:

									ParentalLWCTYHEKSLVKSACQKTLSDLKLSYLDLYLVHWPTGFKAGKDMFPLDDKGNVIPSNTSFLDTWTAMEEL
		L.CTYHEKSLVK.A.QKTLSDLKL.YLD.YL.HWPTGFKAGKD.FPLDDKGNVIPSNTSFLDTW.AM.EL
RetrocopyLSCTYHEKSLVKTAFQKTLSDLKLNYLDIYLNHWPTGFKAGKDLFPLDDKGNVIPSNTSFLDTWMAMGEL
ParentalVDAGLVKAIGISNFNHDQIEKLLTKPGLKYQPAVNQIECHPYLTQEKLIEYCQSKGIVVTAYSPLGSPDR
		VDAGLVKAIGIS.FNHDQIEKLLTKPGL...PAVNQIECHPYLTQEKLIEYC.SKGI.VT.YSPLGSPDR
RetrocopyVDAGLVKAIGISSFNHDQIEKLLTKPGLM*EPAVNQIECHPYLTQEKLIEYCLSKGIMVTTYSPLGSPDR
ParentalPWAKPEDPSLLNDPRIQAIAAKHQKTTAQVLIRFHIQRKVVVIPKSITPSRIAENFQ
		PWAKPEDPSLLNDPRIQAIAA.H.K.TAQVLIRFHIQRKVVVIPKSIT.S.IAENFQ
RetrocopyPWAKPEDPSLLNDPRIQAIAAMHKKATAQVLIRFHIQRKVVVIPKSITLS*IAENFQ

							

							Legend:
							
								*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide

						

RNA-Seq - click to see more details

Macropus eugenii was not studied using RNA-Seq expression data.

ChIP-Seq - click to see more details

Macropus eugenii was not studied using ChIP-Seq data.

EST - click to see more details

No EST(s) were mapped for retro_meug_1811 retrocopy.

TSS - click to see more details

Macropus eugenii was not studied using FANTOM5 data.

Lab - click to see more details

retro_meug_1811 was not experimentally validated.

Retrocopy orthology:

Macropus eugenii does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:

Parental genes homology involve 17 parental genes, and 78 retrocopies.

Species	Parental gene accession	Retrocopies number
Bos taurus	ENSBTAG00000009902	3 retrocopies	retro_btau_1092, retro_btau_1642, retro_btau_821,
Canis familiaris	ENSCAFG00000001290	1 retrocopy	retro_cfam_63,
Callithrix jacchus	ENSCJAG00000012231	14 retrocopies	retro_cjac_1140, retro_cjac_1167, retro_cjac_1718, retro_cjac_1973, retro_cjac_2550, retro_cjac_3102, retro_cjac_3143, retro_cjac_3297, retro_cjac_3692, retro_cjac_3840, retro_cjac_3872, retro_cjac_3910, retro_cjac_476, retro_cjac_621,
Dasypus novemcinctus	ENSDNOG00000011358	2 retrocopies	retro_dnov_2214, retro_dnov_721,
Homo sapiens	ENSG00000085662	7 retrocopies	retro_hsap_1261, retro_hsap_1422, retro_hsap_2049, retro_hsap_2663, retro_hsap_312, retro_hsap_4745, retro_hsap_851,
Gorilla gorilla	ENSGGOG00000011731	6 retrocopies	retro_ggor_1477, retro_ggor_1859, retro_ggor_2948, retro_ggor_343, retro_ggor_695, retro_ggor_991,
Macropus eugenii	ENSMEUG00000003434	6 retrocopies	retro_meug_1455, retro_meug_1505, retro_meug_1811 , retro_meug_1980, retro_meug_486, retro_meug_504,
Macropus eugenii	ENSMEUG00000007370	1 retrocopy	retro_meug_1,
Microcebus murinus	ENSMICG00000001921	2 retrocopies	retro_mmur_1087, retro_mmur_66,
Mus musculus	ENSMUSG00000001642	10 retrocopies	retro_mmus_1252, retro_mmus_2082, retro_mmus_2678, retro_mmus_3242, retro_mmus_3488, retro_mmus_444, retro_mmus_534, retro_mmus_764, retro_mmus_784, retro_mmus_920,
Nomascus leucogenys	ENSNLEG00000013037	7 retrocopies	retro_nleu_1246, retro_nleu_1533, retro_nleu_2099, retro_nleu_2569, retro_nleu_2570, retro_nleu_418, retro_nleu_419,
Otolemur garnettii	ENSOGAG00000016156	2 retrocopies	retro_ogar_1282, retro_ogar_808,
Procavia capensis	ENSPCAG00000016195	1 retrocopy	retro_pcap_428,
Pongo abelii	ENSPPYG00000018017	8 retrocopies	retro_pabe_1050, retro_pabe_1089, retro_pabe_1176, retro_pabe_1672, retro_pabe_2411, retro_pabe_3691, retro_pabe_370, retro_pabe_694,
Pan troglodytes	ENSPTRG00000019716	6 retrocopies	retro_ptro_1365, retro_ptro_1794, retro_ptro_254, retro_ptro_3040, retro_ptro_3160, retro_ptro_972,
Rattus norvegicus	ENSRNOG00000009513	1 retrocopy	retro_rnor_1438,
Tupaia belangeri	ENSTBEG00000013327	1 retrocopy	retro_tbel_3093,

	RetrogeneDB ID:	retro_meug_1811
Retrocopy location	Organism:	*Wallaby (Macropus eugenii)*
	Coordinates:	Scaffold60822:14727..15318(-)
	Located in intron of:	None
Retrocopy information	Ensembl ID:	None
	Aliases:	None
	Status:	NOVEL
Parental gene information	Parental gene summary:
	Parental gene symbol:	AKR1B1
	Ensembl ID:	ENSMEUG00000003434
	Aliases:	None
	Description:	aldo-keto reductase family 1, member B1 (aldose reductase) [Source:HGNC Symbol;Acc:381]

Parental	LWCTYHEKSLVKSACQKTLSDLKLSYLDLYLVHWPTGFKAGKDMFPLDDKGNVIPSNTSFLDTWTAMEEL
	L.CTYHEKSLVK.A.QKTLSDLKL.YLD.YL.HWPTGFKAGKD.FPLDDKGNVIPSNTSFLDTW.AM.EL
Retrocopy	LSCTYHEKSLVKTAFQKTLSDLKLNYLDIYLNHWPTGFKAGKDLFPLDDKGNVIPSNTSFLDTWMAMGEL

Parental	VDAGLVKAIGISNFNHDQIEKLLTKPGLKYQPAVNQIECHPYLTQEKLIEYCQSKGIVVTAYSPLGSPDR
	VDAGLVKAIGIS.FNHDQIEKLLTKPGL...PAVNQIECHPYLTQEKLIEYC.SKGI.VT.YSPLGSPDR
Retrocopy	VDAGLVKAIGISSFNHDQIEKLLTKPGLM*EPAVNQIECHPYLTQEKLIEYCLSKGIMVTTYSPLGSPDR

Parental	PWAKPEDPSLLNDPRIQAIAAKHQKTTAQVLIRFHIQRKVVVIPKSITPSRIAENFQ
	PWAKPEDPSLLNDPRIQAIAA.H.K.TAQVLIRFHIQRKVVVIPKSIT.S.IAENFQ
Retrocopy	PWAKPEDPSLLNDPRIQAIAAMHKKATAQVLIRFHIQRKVVVIPKSITLS*IAENFQ

*	Stop codon
>	Forward frameshift by one nucleotide
<	Reverse frameshift by one nucleotide

RetrogeneDB ID:

retro_meug_1811